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Comment: Error using champ.import
by
shilpa
• 0
I'm having same issues too. Did anyone manage to resolve it?
Answer: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
You don't explain how many samples you have (columns of data), but the warning message shown in your post would arise if there are in fact …
Comment: Methylation Analysis experiment design using Limma
by
SamGG
▴ 350
I said that `, myLoad$pd` was incorrect, because the variables you transformed are not reintroduced in `myLoad$pd`. It should be `myLoad$pd…
Comment: DESeq2 remove batch effect
by
Ashley
• 0
DESeq2 remove batch effect is always my favorite and finally I got the detail here to know how to do it. To get the [Brisbane Tree Removal]…
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Hello Sam, Thank you for your feedback ! So I have tried your suggestions by removing myLoad$pd and the cell populations that cause probl…
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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