No posts found.
0 results • Page 1 of 1
Recent ...
Replies
Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.6k
It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k
You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them: cou…
Answer: DiffBind on ATAC seq data by Rory Stark ★ 4.6k
Within `DiffBind`, the main thing is to change the value of the `summits` parameter when calling `dba.count()`. The default value of 200 re…
Answer: Help with Error in DiffBind by Rory Stark ★ 4.6k
This error is usually caused by incorrectly specifying the `PeakCaller` (or `ScoreCol` if present). What is the format of your peak file…
Answer: deseq2 normalization and statistical method by ATpoint ★ 2.4k
This is all answered in the vignette which you even reference (what DESeq() does, how to get normalized counts and to use raw counts). I al…
Votes
Answer: Can I run DESeq2 with SMART-Seq data
Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData
A: Compare and filter two BAM files, one record at a time
Answer: Batch correction and Deseq2
Answer: How edgeR estimate the common dispersion?
Awards • All
Popular Question to wt215 • 0
Popular Question to Malcolm Cook ★ 1.6k
Popular Question to shepherl 3.4k
Popular Question to Michael Love 39k
Popular Question to Assa Yeroslaviz ★ 1.5k
Locations • All
United Kingdom, just now
United Kingdom, 2 minutes ago
Hong Kong, 3 minutes ago
CRUK, Cambridge, UK, 5 minutes ago
University of Zurich, Switzerland, 8 minutes ago
Traffic: 528 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6