Bioconductor 10x

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DropletUtils emptyDrops scRNA scRNAseq 10x

20 months ago Peter Hickey ▴ 740

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2.3k

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10x scrna-seq

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by jma1991 ▴ 70

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by vincent.croset ▴ 20

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DropletUtils emptyDrops 10x

updated 3.2 years ago by Aaron Lun ★ 28k • written 3.2 years ago by Peter Hickey ▴ 740

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604

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RNAseq 10X

13 months ago wt215 • 0

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645

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SingleCell emptyDrops 10X

updated 11 months ago by Peter Hickey ▴ 740 • written 11 months ago by sandra.garces.19 • 0

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by xingxd16 ▴ 20

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189

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CellRanger emptyDrops scRNAseq 10X

4 weeks ago • updated 29 days ago rocanja ▴ 60

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740