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21 months ago • updated 20 months ago
Peter Hickey
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updated 3.8 years ago by
Michael Love
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written 3.8 years ago by
vincent.croset
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rocanja
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updated 11 months ago by
Peter Hickey
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written 11 months ago by
sandra.garces.19
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updated 3.3 years ago by
Aaron Lun
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written 3.3 years ago by
Peter Hickey
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Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★
3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴
10
With all my love, thank you Guido, GOxploreR beeing a big ally for me.
I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★
1.3k
You didn't generate it with an experiment, you made it up:
Your PCA doesn't look like a good RNASeq experiment, because it's not.
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