updated 3.1 years ago by
sergisayolspuig
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written 3.1 years ago by
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Comment: filtering out lowly expressed genes by groups
by
sohail.mbio
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10
My question is how to avoid these DEGs? There are so many DEGs that are not actually expressed at T0. Is there any filter ?
my current code…
Answer: Why dbConnect GEOmetadb_demo.sqlite shows some information while dbConnect GEOme
by
James W. MacDonald
63k
The current `GEOmetadb.sqlite` file apparently has no entries for the `bioc_package` field. The table isn't empty however.
```
##
> z…
Answer: DMRcate design
by
James W. MacDonald
63k
The help page for `cpg.annotate` says this:
```
design: Study design matrix. Identical context to differential
analysis pipe…
Comment: filtering out lowly expressed genes by groups
by
James W. MacDonald
63k
Is there a question?
Answer: Further analysis after limma regression output
by
James W. MacDonald
63k
The conventional way to analyze methylation data is to look for genomic regions that have consistent changes in methylation status, as biol…
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