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Comment: error running UniProt.ws by James W. MacDonald 60k
https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html
Comment: error running UniProt.ws by James W. MacDonald 60k
@marcelramos You have introduced a dependency on `BiocBaseUtils`, but that package is only available in devel.
Comment: GSEA with Wikipathways not entirely reproducible by Guido Hooiveld ★ 3.3k
Without having access to all your input files it is difficult to explain why this happened. However, some thoughts... Did you use the exact…
Comment: IsoformSwitchAnalyzeR package on mouse data by k.vitting.seerup ▴ 100
Which version of Ensembl are you using?
Answer: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 100
Looks like you are supplying the wrong annotation as a GTF file. If you look at the examples the id's the GTF annotation are called "X…
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Answer: TPM normalization starting with read counts
DEseq2 time-series design.
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
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