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ALDEx2
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How to create an aldex.clr object from a "selex" data table
ALDEx2
21 months ago
Greg
• 0
0
votes
3
replies
1.5k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 11 months ago by
Lucie
• 0 • written 15 months ago by
RvH
• 0
0
votes
0
replies
630
views
Aldex2 BioCParallel issues
aldex2
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
jc235601
▴ 20
0
votes
0
replies
874
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Aldex2 feature request - controlling for additional variables
ALDEx2
ALDEx
microbiome
16s
5.3 years ago
mstagliamonte
▴ 10
0
votes
0
replies
492
views
ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
Metagenomics
IQLR
ALDEx2
15 months ago
cwarden45
• 0
0
votes
0
replies
448
views
Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
8 months ago
amir
• 0
2
votes
0
replies
825
views
Aldex2 error following tutorial - complex study design
software error
aldex2
4.8 years ago
mstagliamonte
▴ 10
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
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Michael Love
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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