Showing : ANOVA • reset
3
votes
14
replies
4.1k
views
Moderated t-test in Anova
anova moderated t-test
updated 8.9 years ago by 50k • written 8.9 years ago by • 0
5
votes
13
replies
2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 4.7 years ago by 41k • written 4.7 years ago by • 0
2
votes
8
replies
3.7k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 9.2 years ago by 50k • written 9.2 years ago by • 0
1
vote
8
replies
1.4k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
2
votes
6
replies
2.0k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 2.1 years ago by ▴ 90 • written 6.8 years ago by ▴ 90
2
votes
6
replies
301
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
9 days ago Chris • 0
5
votes
6
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1.4k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 270
0
votes
6
replies
4.4k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.8 years ago by 50k • written 6.8 years ago by ▴ 50
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
7.9 years ago David ▴ 860
2
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4
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2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
3.4 years ago ecg1g15 ▴ 20
3
votes
4
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1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
3.0 years ago Antonio M. • 0
1
vote
4
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1.5k
views
DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 20
8
votes
4
replies
5.7k
views
Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 8.9 years ago by ★ 7.9k • written 8.9 years ago by ▴ 20
3
votes
4
replies
1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 8.0 years ago by ★ 28k • written 8.0 years ago by • 0
2
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4
replies
1.4k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.8 years ago by • 0 • written 5.3 years ago by • 0
3
votes
3
replies
10.0k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 2.4 years ago by 41k • written 9.6 years ago by ▴ 10
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 80
2
votes
3
replies
1.2k
views
ANOVA Limma
ANOVA limma
updated 3.1 years ago by 65k • written 3.1 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Anova test on gene expression data
Anova gene expression
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger rnaseq anova
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 9.2 years ago by 50k • written 9.2 years ago by • 0
4
votes
2
replies
9.1k
views
DESeq2 LRT output help
deseq2 LRT anova
8.9 years ago rclaire ▴ 20
2
votes
2
replies
544
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
18 months ago evan.j.williams ▴ 10
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma anova
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 120
1
vote
1
reply
846
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
1
vote
1
reply
732
views
DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by ▴ 20
1
vote
1
reply
750
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.0 years ago by 65k • written 6.0 years ago by • 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
8.7 years ago BM • 0
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
0
votes
1
reply
1.5k
views
edgeR 2-way ANOVA testing
edger ANOVA
updated 5.4 years ago by 50k • written 5.4 years ago by • 0
32 results • Page 1 of 1
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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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