Showing : ASpli • reset
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I am trying to detect alternative splicing.
ASpli
4 days ago Sebashish • 0
0
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0
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211
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Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
7 weeks ago vipul14 • 0
0
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3
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3.3k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 7 months ago by • 0 • written 18 months ago by • 0
5
votes
6
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830
views
ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 8 months ago by 50k • written 8 months ago by ▴ 10
0
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1
reply
637
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 14 months ago by • 0 • written 15 months ago by • 0
0
votes
1
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1.6k
views
ASpli: Error in h(simpleError(msg, call))
ASpli
updated 21 months ago by • 0 • written 2.7 years ago by • 0
0
votes
0
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602
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ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
2.2 years ago hamza_karakurt ▴ 50
1
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3
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1.0k
views
ASpli error message
ASpli
updated 2.2 years ago by ▴ 50 • written 3.0 years ago by ▴ 50
6
votes
10
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1.7k
views
ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 2.6 years ago by • 0 • written 2.9 years ago by ▴ 20
1
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11
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1.9k
views
Aspli: error with gbCounts
Aspli ASpli
3.1 years ago • updated 3.0 years ago jbono ▴ 10
0
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1
reply
785
views
ASpli package function plotGenomicRegions fails in windows
ASpli plotGenomicRegions
updated 3.7 years ago by ▴ 50 • written 4.8 years ago by • 0
0
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1
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581
views
function plotgenomicregions does not appear in the aspli package installed in windows
software error aspli plotgenomicregions windows
4.0 years ago joanmarquez21 • 0
3
votes
2
replies
1.0k
views
ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
5.2 years ago fernandalpcosta ▴ 10
0
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0
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885
views
ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
5.3 years ago abdul rawoof ▴ 60
0
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0
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929
views
ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
5.4 years ago nicolas.guyon2 • 0
0
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0
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809
views
ASPLI (RNAseq AS) R package error
rnaseq ASPLI
5.8 years ago dina.hesham139 • 0
0
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0
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1.0k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
5.9 years ago arphatak • 0
0
votes
1
reply
883
views
Splicing analysis with ASpli
ASpli
updated 6.1 years ago by ★ 1.5k • written 6.1 years ago by ▴ 30
2
votes
2
replies
1.4k
views
ASpli ERROR during the counting step
ASpli rnaseq
updated 6.1 years ago by ▴ 10 • written 6.4 years ago by ▴ 10
19 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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