Bioconductor ATACSeq

Showing : ATACSeq • reset

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191

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DiffBind DESeq2 ATACSeq

6 days ago • updated 4 days ago lonn • 0

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DiffBind ATACSeq

27 days ago Pierre Lindenbaum ▴ 10

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285

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DiffBind ATACSeq

3 months ago isaromero8888 • 0

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228

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DiffBind edgeR ATACSeq DESeq2

3 months ago Jawahar • 0

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239

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DiffBind ATACSeq

3 months ago inna.gur • 0

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627

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ATACseqQC ATACSeq

updated 7 weeks ago by danalvoronov ▴ 10 • written 4 months ago by jfmay • 0

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387

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dba.count DiffBind ATACSeq

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by sophie.hfliu • 0

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795

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DiffBind ATACSeq

updated 9 months ago by Malcolm Cook ★ 1.6k • written 9 months ago by Nebat • 0

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1.2k

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ATACSeq

updated 8 months ago by Noah • 0 • written 20 months ago by Taeim • 0

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1.6k

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ATACSeq regionCounts csaw

updated 4 months ago by dineika.chandrananda • 0 • written 24 months ago by zgraytho88 • 0

10 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k