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Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★
1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag.
[1]: https://bioconductor.org/package…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★
4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here.
[1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴
10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★
4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
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