Showing : ATACseqQC • reset
1
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11
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3.8k
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ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by • 0
0
votes
9
replies
6.3k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
4.9 years ago Xiaojie Cheng • 0
4
votes
5
replies
2.2k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 7.1 years ago by ★ 4.3k • written 7.1 years ago by ▴ 30
1
vote
2
replies
15k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by • 0
0
votes
7
replies
3.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 8.1 years ago by • 0 • written 8.1 years ago by ▴ 10
5
votes
9
replies
5.5k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 8.8 years ago by ★ 1.4k • written 8.8 years ago by ▴ 10
0
votes
9
replies
2.4k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 7.7 years ago by ★ 4.3k • written 7.7 years ago by ▴ 10
0
votes
2
replies
1.5k
views
ATACseqQC needs too much memory
ATACseqQC
updated 8.3 years ago by ★ 4.3k • written 8.3 years ago by • 0
0
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5
replies
2.6k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
0
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1
reply
2.4k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 8.0 years ago by ★ 1.4k • written 8.0 years ago by • 0
0
votes
1
reply
1.3k
views
ATACseqQC questions in R language
atacseqqc
updated 7.8 years ago by ★ 1.4k • written 7.8 years ago by • 0
0
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1
reply
1.5k
views
ATACseqQC: a few questions
ATACseqQC
updated 7.7 years ago by ★ 4.3k • written 7.7 years ago by • 0
0
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3
replies
1.5k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 7.6 years ago by ★ 1.4k • written 7.7 years ago by ▴ 10
11
votes
21
replies
7.8k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 7.1 years ago by ★ 4.3k • written 7.1 years ago by ▴ 30
0
votes
6
replies
2.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.9 years ago by • 0 • written 6.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by • 0
0
votes
7
replies
2.5k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by • 0
0
votes
2
replies
1.6k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
votes
4
replies
3.5k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by • 0
1
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4
replies
1.9k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 5.5 years ago by ★ 4.3k • written 5.5 years ago by ▴ 10
0
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2
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2.4k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
4.8 years ago Nolan • 0
0
votes
7
replies
1.9k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 2.0 years ago by ▴ 10 • written 2.3 years ago by • 0
1
vote
1
reply
710
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
1
vote
7
replies
2.3k
views
TSSEscore function in ATACseqQC package
ATACseqQC
4.1 years ago Liu Yu-Yu • 0
0
votes
0
replies
1.1k
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
4.0 years ago hyjforesight • 0
0
votes
0
replies
1.2k
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
7.0 years ago Gary ▴ 30
0
votes
0
replies
670
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
2.0 years ago danalvoronov ▴ 10
0
votes
0
replies
886
views
NAs in TSSE for certain windows
ATACseqQC
4.6 years ago red_bricks ▴ 60
0
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7
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2.7k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.7 years ago by ★ 13k • written 6.7 years ago by • 0
0
votes
1
reply
1.2k
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 3.2 years ago by ★ 1.4k • written 3.2 years ago by • 0
0
votes
0
replies
768
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
4.5 years ago xuyao15927402897 • 0
0
votes
5
replies
2.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by • 0
1
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4
replies
1.6k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
5.6 years ago Arpi Beshlikyan • 0
1
vote
2
replies
2.0k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
6.6 years ago beiting ▴ 30
0
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3
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1.9k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.6 years ago by ★ 5.3k • written 4.4 years ago by ▴ 40
35 results • Page 1 of 1
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Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k
I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…
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Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
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Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0
Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k
> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…
Votes
DiffBind dropping peaks in ATAC-seq data
A: decideTests() options in LIMMA
A: Removing cell cycle genes in large data set integration
A: Removing cell cycle genes in large data set integration
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