Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ATACseqQC
•
reset
11
votes
21
replies
5.0k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC
ATAC-Seq
quality analysis
fragment size distribution
library complexity
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Gary
▴ 20
1
vote
11
replies
2.3k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq
ATACseqQC
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
Shuang He
• 0
5
votes
9
replies
3.8k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC
bsgenome
phastcons
rtracklayer
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
crysis405
▴ 10
0
votes
9
replies
3.5k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC
Fragmentsizedistribution
ATAC-seq
3.0 years ago
Xiaojie Cheng
• 0
0
votes
9
replies
1.5k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
aimin.at.work
▴ 10
0
votes
7
replies
1.5k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC
R
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
mbasam
• 0
0
votes
7
replies
1.7k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC
ATAC
ATACseq
software error
Tutorial
updated 4.8 years ago by
Steve Lianoglou
★ 13k • written 4.8 years ago by
mbasam
• 0
1
vote
7
replies
1.4k
views
TSSEscore function in ATACseqQC package
ATACseqQC
2.2 years ago
Liu Yu-Yu
• 0
0
votes
7
replies
2.2k
views
ATACseqQC memory overflow issue
atac-seq
software error
atacseqqc
updated 6.2 years ago by
Haibo.Liu
• 0 • written 6.2 years ago by
José Luis Lavín
▴ 10
0
votes
7
replies
626
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC
ATACSeq
updated 7 weeks ago by
danalvoronov
▴ 10 • written 4 months ago by
jfmay
• 0
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC
ATAC-seq
error
split bam file
updated 5.0 years ago by
contact
• 0 • written 5.0 years ago by
Theo
▴ 10
0
votes
5
replies
1.6k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
kesarwani.anil
• 0
2
votes
5
replies
1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC
bamQC
ATAC-Seq
totalQNAMEs
MAPQ
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Gary
▴ 20
0
votes
5
replies
1.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc
atac-seq
R
bioconductor
rsamtools
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
rita.monteiro
• 0
0
votes
4
replies
1.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC
atacseq
R
updated 3.7 years ago by
Ou, Jianhong
★ 1.3k • written 3.7 years ago by
achaillon
• 0
1
vote
4
replies
952
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc
r
3.7 years ago
Arpi Beshlikyan
• 0
1
vote
4
replies
1.1k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
pedro.rotcha
▴ 10
0
votes
3
replies
1.0k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.8 years ago by
Ou, Jianhong
★ 1.3k • written 5.8 years ago by
aimin.at.work
▴ 10
0
votes
3
replies
1.1k
views
package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 20 months ago by
Rory Stark
★ 5.1k • written 2.5 years ago by
adR
▴ 30
1
vote
2
replies
1.4k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.7 years ago
beiting
▴ 30
0
votes
2
replies
979
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC
factorFootprints
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
Nick Gomez
• 0
1
vote
2
replies
9.2k
views
Interpreting TSS Enrichment Score Summary
atacseq
atacseqqc
tss
enrichment
updated 3.7 years ago by
Ou, Jianhong
★ 1.3k • written 3.7 years ago by
Arpi Beshlikyan
• 0
0
votes
2
replies
1.4k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.9 years ago
Nolan
• 0
0
votes
2
replies
1.1k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
mdurante14
• 0
1
vote
1
reply
174
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 6 weeks ago by
James W. MacDonald
65k • written 6 weeks ago by
ronin
• 0
0
votes
1
reply
898
views
ATACseqQC questions in R language
atacseqqc
updated 5.9 years ago by
Ou, Jianhong
★ 1.3k • written 5.9 years ago by
rsong
• 0
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
n.pantelireis16
• 0
0
votes
1
reply
546
views
Error in ATACseqQC bamQC analysis
ATACSeq
ATACseqQC
updated 15 months ago by
Ou, Jianhong
★ 1.3k • written 15 months ago by
tahir.msajid
• 0
0
votes
1
reply
951
views
ATAC-QC fragSizeDist function
ATAC-seq
ATACseqQC
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
Shuang He
• 0
0
votes
1
reply
1.0k
views
ATACseqQC: a few questions
ATACseqQC
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
david.mckinnon
• 0
0
votes
0
replies
107
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R
ATACseqQC
7 weeks ago
danalvoronov
▴ 10
0
votes
0
replies
765
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC
ATAC-Seq
Library complexity
estimateLibComplexity
5.1 years ago
Gary
▴ 20
0
votes
0
replies
479
views
NAs in TSSE for certain windows
ATACseqQC
2.7 years ago
red_bricks
▴ 50
0
votes
0
replies
568
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC
ATACSeq
2.1 years ago
hyjforesight
• 0
0
votes
0
replies
451
views
ATACseqQC function fragSizeDist returns error
fragSizeDist
ATACseqQC
2.7 years ago
xuyao15927402897
• 0
35 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Popular Question
to
taur.vil
• 0
Locations
• All
WEHI, Melbourne, Australia,
2 minutes ago
Canada,
2 minutes ago
United States,
3 minutes ago
San Diego,
3 minutes ago
United Kingdom,
10 minutes ago
Traffic: 716 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6