Showing : ATACseqQC • reset
11
votes
21
replies
6.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
1
vote
11
replies
2.9k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
5
votes
9
replies
4.5k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 10
0
votes
9
replies
4.6k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.8 years ago Xiaojie Cheng • 0
0
votes
9
replies
1.9k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by ▴ 10
0
votes
7
replies
2.0k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
votes
7
replies
2.1k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.6 years ago by ★ 13k • written 5.6 years ago by • 0
1
vote
7
replies
1.8k
views
TSSEscore function in ATACseqQC package
ATACseqQC
3.0 years ago Liu Yu-Yu • 0
0
votes
7
replies
2.6k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
votes
7
replies
1.3k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 11 months ago by ▴ 10 • written 14 months ago by • 0
0
votes
6
replies
2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 10
0
votes
5
replies
2.0k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
2
votes
5
replies
1.8k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
0
votes
5
replies
1.8k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
4
replies
2.4k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
vote
4
replies
1.2k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.5 years ago Arpi Beshlikyan • 0
1
vote
4
replies
1.4k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 10
0
votes
3
replies
1.4k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.5 years ago by ★ 5.2k • written 3.3 years ago by ▴ 40
1
vote
2
replies
1.7k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.5 years ago beiting ▴ 30
0
votes
2
replies
1.2k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.5 years ago by ★ 4.3k • written 5.5 years ago by • 0
1
vote
2
replies
12k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
0
votes
2
replies
1.9k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.7 years ago Nolan • 0
0
votes
2
replies
1.3k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.2 years ago by ★ 4.3k • written 7.2 years ago by • 0
1
vote
1
reply
414
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 11 months ago by 68k • written 11 months ago by • 0
0
votes
1
reply
1.1k
views
ATACseqQC questions in R language
atacseqqc
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
0
votes
1
reply
802
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by • 0
0
votes
1
reply
1.2k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
votes
1
reply
1.2k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
votes
0
replies
359
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
11 months ago danalvoronov ▴ 10
0
votes
0
replies
957
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.9 years ago Gary ▴ 20
0
votes
0
replies
665
views
NAs in TSSE for certain windows
ATACseqQC
3.5 years ago red_bricks ▴ 60
0
votes
0
replies
808
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.9 years ago hyjforesight • 0
0
votes
0
replies
588
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.5 years ago xuyao15927402897 • 0
35 results • Page 1 of 1
Recent ...
Replies
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Votes
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards • All
Popular Question to ramiro.barrantes ▴ 10
Popular Question to Vincent J. Carey, Jr. 6.7k
Teacher to Gordon Smyth 52k
Scholar to James W. MacDonald 68k
Popular Question to Sara ▴ 20
Locations • All
The Netherlands, 10 minutes ago
WEHI, Melbourne, Australia, 13 minutes ago
France/Marseille/Inserm, 31 minutes ago
UPF, Barcelona, Spain, 1 hour ago
Germany, 1 hour ago
Traffic: 757 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6