Showing : ATACseqQC • reset
11
votes
21
replies
7.5k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 20
1
vote
11
replies
3.6k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
5
votes
9
replies
5.4k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by ▴ 10
0
votes
9
replies
6.1k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
4.8 years ago Xiaojie Cheng • 0
0
votes
9
replies
2.4k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 7.6 years ago by ★ 4.3k • written 7.6 years ago by ▴ 10
0
votes
7
replies
2.4k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
votes
7
replies
2.6k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.6 years ago by ★ 13k • written 6.6 years ago by • 0
1
vote
7
replies
2.3k
views
TSSEscore function in ATACseqQC package
ATACseqQC
4.0 years ago Liu Yu-Yu • 0
0
votes
7
replies
3.2k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 10
0
votes
7
replies
1.9k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 23 months ago by ▴ 10 • written 2.2 years ago by • 0
0
votes
6
replies
2.8k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
votes
5
replies
2.6k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
2
votes
5
replies
2.1k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by ▴ 20
0
votes
5
replies
2.3k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 5.7 years ago by ★ 4.0k • written 5.7 years ago by • 0
0
votes
4
replies
3.3k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by • 0
1
vote
4
replies
1.5k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
5.5 years ago Arpi Beshlikyan • 0
1
vote
4
replies
1.8k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by ▴ 10
0
votes
3
replies
1.5k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 10
0
votes
3
replies
1.9k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.5 years ago by ★ 5.3k • written 4.3 years ago by ▴ 40
1
vote
2
replies
2.0k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
6.5 years ago beiting ▴ 30
0
votes
2
replies
1.5k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
1
vote
2
replies
15k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by • 0
0
votes
2
replies
2.4k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
4.7 years ago Nolan • 0
0
votes
2
replies
1.5k
views
ATACseqQC needs too much memory
ATACseqQC
updated 8.2 years ago by ★ 4.3k • written 8.2 years ago by • 0
1
vote
1
reply
678
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
1
reply
1.3k
views
ATACseqQC questions in R language
atacseqqc
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by • 0
0
votes
1
reply
2.3k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.9 years ago by ★ 1.3k • written 7.9 years ago by • 0
0
votes
1
reply
1.1k
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 3.1 years ago by ★ 1.3k • written 3.1 years ago by • 0
0
votes
1
reply
1.5k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
votes
1
reply
1.5k
views
ATACseqQC: a few questions
ATACseqQC
updated 7.6 years ago by ★ 4.3k • written 7.6 years ago by • 0
0
votes
0
replies
659
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
23 months ago danalvoronov ▴ 10
0
votes
0
replies
1.2k
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
6.9 years ago Gary ▴ 20
0
votes
0
replies
873
views
NAs in TSSE for certain windows
ATACseqQC
4.5 years ago red_bricks ▴ 60
0
votes
0
replies
1.0k
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.9 years ago hyjforesight • 0
0
votes
0
replies
765
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
4.5 years ago xuyao15927402897 • 0
35 results • Page 1 of 1
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All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
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