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ATACseqQC
•
reset
11
votes
21
replies
6.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC
ATAC-Seq
quality analysis
fragment size distribution
library complexity
updated 6.0 years ago by
Julie Zhu
★ 4.3k • written 6.0 years ago by
Gary
▴ 20
5
votes
9
replies
4.5k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC
bsgenome
phastcons
rtracklayer
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
crysis405
▴ 10
2
votes
5
replies
1.8k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC
bamQC
ATAC-Seq
totalQNAMEs
MAPQ
updated 6.0 years ago by
Julie Zhu
★ 4.3k • written 6.0 years ago by
Gary
▴ 20
1
vote
7
replies
1.8k
views
TSSEscore function in ATACseqQC package
ATACseqQC
3.1 years ago • updated 3.0 years ago
Liu Yu-Yu
• 0
1
vote
4
replies
1.4k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.5 years ago by
Julie Zhu
★ 4.3k • written 4.5 years ago by
pedro.rotcha
▴ 10
1
vote
1
reply
416
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
ronin
• 0
1
vote
2
replies
1.7k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.5 years ago
beiting
▴ 30
1
vote
11
replies
2.9k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq
ATACseqQC
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
Shuang He
• 0
1
vote
4
replies
1.2k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc
r
4.5 years ago
Arpi Beshlikyan
• 0
1
vote
2
replies
12k
views
Interpreting TSS Enrichment Score Summary
atacseq
atacseqqc
tss
enrichment
updated 4.5 years ago by
Ou, Jianhong
★ 1.3k • written 4.5 years ago by
Arpi Beshlikyan
• 0
0
votes
7
replies
2.2k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC
ATAC
ATACseq
software error
Tutorial
updated 5.7 years ago by
Steve Lianoglou
★ 13k • written 5.7 years ago by
mbasam
• 0
0
votes
1
reply
1.2k
views
ATAC-QC fragSizeDist function
ATAC-seq
ATACseqQC
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
Shuang He
• 0
0
votes
7
replies
2.0k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC
R
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
mbasam
• 0
0
votes
2
replies
1.2k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC
factorFootprints
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
Nick Gomez
• 0
0
votes
5
replies
1.8k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc
atac-seq
R
bioconductor
rsamtools
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
rita.monteiro
• 0
0
votes
4
replies
2.4k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC
atacseq
R
updated 4.5 years ago by
Ou, Jianhong
★ 1.3k • written 4.5 years ago by
achaillon
• 0
0
votes
2
replies
1.9k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.7 years ago
Nolan
• 0
0
votes
9
replies
4.6k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC
Fragmentsizedistribution
ATAC-seq
3.8 years ago
Xiaojie Cheng
• 0
0
votes
7
replies
1.3k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC
ATACSeq
updated 11 months ago by
danalvoronov
▴ 10 • written 14 months ago by
jfmay
• 0
0
votes
0
replies
668
views
NAs in TSSE for certain windows
ATACseqQC
3.5 years ago
red_bricks
▴ 60
0
votes
1
reply
807
views
Error in ATACseqQC bamQC analysis
ATACSeq
ATACseqQC
updated 2.1 years ago by
Ou, Jianhong
★ 1.3k • written 2.1 years ago by
tahir.msajid
• 0
0
votes
0
replies
591
views
ATACseqQC function fragSizeDist returns error
fragSizeDist
ATACseqQC
3.5 years ago
xuyao15927402897
• 0
0
votes
3
replies
1.4k
views
package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 2.5 years ago by
Rory Stark
★ 5.2k • written 3.4 years ago by
adR
▴ 40
0
votes
0
replies
810
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC
ATACSeq
2.9 years ago
hyjforesight
• 0
0
votes
5
replies
2.0k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
kesarwani.anil
• 0
0
votes
0
replies
361
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R
ATACseqQC
11 months ago
danalvoronov
▴ 10
0
votes
2
replies
1.3k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
mdurante14
• 0
0
votes
7
replies
2.6k
views
ATACseqQC memory overflow issue
atac-seq
software error
atacseqqc
updated 7.0 years ago by
Haibo.Liu
• 0 • written 7.0 years ago by
José Luis Lavín
▴ 10
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
n.pantelireis16
• 0
0
votes
1
reply
1.1k
views
ATACseqQC questions in R language
atacseqqc
updated 6.7 years ago by
Ou, Jianhong
★ 1.3k • written 6.7 years ago by
rsong
• 0
0
votes
1
reply
1.2k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.6 years ago by
Julie Zhu
★ 4.3k • written 6.6 years ago by
david.mckinnon
• 0
0
votes
9
replies
1.9k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.6 years ago by
Julie Zhu
★ 4.3k • written 6.6 years ago by
aimin.at.work
▴ 10
0
votes
3
replies
1.2k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.6 years ago by
Ou, Jianhong
★ 1.3k • written 6.6 years ago by
aimin.at.work
▴ 10
0
votes
0
replies
968
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC
ATAC-Seq
Library complexity
estimateLibComplexity
5.9 years ago
Gary
▴ 20
0
votes
6
replies
2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC
ATAC-seq
error
split bam file
updated 5.8 years ago by
contact
• 0 • written 5.8 years ago by
Theo
▴ 10
35 results • Page
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