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AUCell
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Intepretation of results
AUCell
written 5 weeks ago by
jasperwong_123
• 0
2
votes
3
replies
1.6k
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Applicability of AUCell to bulk RNA-seq
AUCell
AUcell
22 months ago • updated 21 months ago
Lucy
▴ 60
3
votes
1
reply
838
views
Should I set a seed prior to running AUCell?
AUCell
updated 2.6 years ago by
ATpoint
★ 4.8k • written 2.6 years ago by
Lucy
▴ 60
1
vote
5
replies
2.1k
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RcisTarget error with multicore processing
RcisTarget
aucell
SCENIC
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
jka8119
▴ 10
2
votes
4
replies
1.7k
views
Cannot install AUCell 1.2.2
AUCell
SCENIC
updated 7.0 years ago by
sara.aibar
▴ 10 • written 7.0 years ago by
Xingyu
• 0
5 results • Page
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Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Geoff
• 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Comment: cannot download atena annotation for human
by
Davide
• 0
Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …
Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove
by
macdonaldfrench7286566
• 0
Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
by
Kateřina
• 0
I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!
Votes
Answer: parameters of filterByExpr
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
Answer: GAlignments Cigar to GRanges
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