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Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
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Yang Shi
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Recent ...
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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Thank you Michael for your attention to my question. I am truly grateful.
I subsetted the data using lines of codes to include only the g…
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I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.
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Thanks for sharing an example file.
This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…
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Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136).
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I'm one of the **bsseq** developers. Are you able to share one of your files with me (e.g., via Dropbox, Google Drive, OneDrive, etc.). Tha…
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