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AgiMicroRna
•
reset
0
votes
8
replies
1.8k
views
AgiMicroRna problems
Normalization
PROcess
microRNA
AgiMicroRna
Normalization
PROcess
microRNA
AgiMicroRna
13.6 years ago
Mark Cowley
▴ 910
0
votes
6
replies
1.3k
views
AgiMicroRna and Replicates
AgiMicroRna
AgiMicroRna
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
6
replies
1.8k
views
Normalisation of Agilent microRNA arrays using inbuilt controls?
GO
Cancer
vsn
AgiMicroRna
GO
Cancer
vsn
AgiMicroRna
updated 14.2 years ago by
Wei Shi
★ 3.6k • written 14.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
6
replies
1.5k
views
Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx
AgiMicroRna
bgx
AgiMicroRna
updated 12.2 years ago by
Lucas Santana dos Santos
▴ 60 • written 12.2 years ago by
Karthik K N
▴ 200
0
votes
4
replies
1.3k
views
Model variable optimisation
Regression
probe
limma
AgiMicroRna
Regression
probe
limma
AgiMicroRna
updated 13.8 years ago by
Steve Shen
▴ 330 • written 13.8 years ago by
Tony McBryan
▴ 60
0
votes
4
replies
1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization
GeneSpring
microRNA
AgiMicroRna
Normalization
GeneSpring
microRNA
AgiMicroRna
updated 11.7 years ago by
Paul Geeleher
★ 1.3k • written 11.7 years ago by
Seyit Ali KAYIS
▴ 30
0
votes
4
replies
1.6k
views
Loading data into AgiMicroRna
AgiMicroRna
AgiMicroRna
updated 13.5 years ago by
Neel Aluru
▴ 460 • written 13.5 years ago by
Steve Taylor
▴ 280
0
votes
3
replies
1.2k
views
Agilent Array Analysis Question
affy
limma
Agi4x44PreProcess
AgiMicroRna
affy
limma
Agi4x44PreProcess
AgiMicroRna
updated 14.4 years ago by
Francois Pepin
★ 1.3k • written 14.4 years ago by
Sunny Srivastava
▴ 350
0
votes
3
replies
2.6k
views
Access to Source Codes of Packges
limma
AgiMicroRna
limma
AgiMicroRna
updated 11.8 years ago by
Sean Davis
21k • written 11.8 years ago by
Karthik K N
▴ 200
0
votes
3
replies
1.5k
views
AgiMicroRna with single channel Agilent Array
AgiMicroRna
AgiMicroRna
12.8 years ago
John Lande
▴ 280
0
votes
3
replies
1.2k
views
AgiMicroRna problems
miRNA
Normalization
FeatureExtraction
PROcess
microRNA
AgiMicroRna
miRNA
Normalization
updated 13.6 years ago by
Mike Walter
▴ 230 • written 13.6 years ago by
Mark Cowley
▴ 910
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent
agimicrorna
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ahadli.farid
▴ 30
0
votes
2
replies
1.3k
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray
Network
microRNA
AgiMicroRna
Microarray
Network
microRNA
AgiMicroRna
updated 14.1 years ago by
Alberto Goldoni
▴ 60 • written 14.1 years ago by
Sean Davis
21k
1
vote
2
replies
1.1k
views
Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
6.5 years ago
neelakandanbt
• 0
0
votes
2
replies
1.3k
views
problems in reading a file in AgiMicroRna package
agimicrorna
read.agimicrorna
agilent microarrays
updated 6.5 years ago by
Axel Klenk
★ 1.0k • written 6.5 years ago by
neelakandanbt
• 0
0
votes
1
reply
1.2k
views
AgiMicroRna problem
Annotation
microRNA
AgiMicroRna
Annotation
microRNA
AgiMicroRna
updated 13.2 years ago by
Paulo Nuin
▴ 200 • written 13.2 years ago by
Pedro Lopez-Romero
▴ 120
0
votes
1
reply
1.2k
views
AgiMicroRna and readMicroRnaFE
miRNA
AgiMicroRna
miRNA
AgiMicroRna
updated 13.6 years ago by
Richard Friedman
★ 2.0k • written 13.6 years ago by
Paulo Nuin
▴ 200
0
votes
1
reply
1.7k
views
AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO
AgiMicroRna
GO
AgiMicroRna
updated 11.2 years ago by
Axel Klenk
★ 1.0k • written 11.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess
AgiMicroRna
PROcess
AgiMicroRna
updated 14.0 years ago by
Seth Falcon
★ 7.4k • written 14.0 years ago by
heyi xiao
▴ 360
0
votes
1
reply
1.0k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer
probe
AgiMicroRna
Cancer
probe
AgiMicroRna
updated 13.8 years ago by
Pedro López Romero
▴ 360 • written 13.8 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
559
views
Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
topijush
▴ 10
0
votes
1
reply
787
views
Installing AgiMicroRna Package
AgiMicroRna
AgiMicroRna
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Karthik K N
▴ 200
0
votes
1
reply
844
views
AgiMicroRna package error message
Normalization
microRNA
AgiMicroRna
Normalization
microRNA
AgiMicroRna
13.8 years ago
Wang, Yonghong NIH/NCI
▴ 60
0
votes
0
replies
968
views
Limma - batch issues
miRNA
Microarray
limma
PROcess
AgiMicroRna
miRNA
Microarray
limma
PROcess
AgiMicroRna
12.8 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
1.4k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA
zebrafish
probe
AgiMicroRna
miRNA
zebrafish
probe
AgiMicroRna
13.9 years ago
Neel Aluru
▴ 460
0
votes
0
replies
686
views
mvaPlots of RMA normalized data in AgiMicroRNA
Cancer
AgiMicroRna
Cancer
AgiMicroRna
13.8 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
716
views
AgiMicroRna and ComBat
miRNA
probe
AgiMicroRna
miRNA
probe
AgiMicroRna
13.8 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
762
views
ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
13.2 years ago
Paola Ostano
▴ 10
0
votes
0
replies
1.1k
views
Agi4x44PreProcess
GUI
zebrafish
probe
AgiMicroRna
GUI
zebrafish
probe
AgiMicroRna
13.6 years ago
Neel Aluru
▴ 460
0
votes
0
replies
809
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe
microRNA
AgiMicroRna
probe
microRNA
AgiMicroRna
12.7 years ago
Viki S
▴ 20
0
votes
0
replies
1.1k
views
Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe
AgiMicroRna
probe
AgiMicroRna
12.2 years ago
Karthik K N
▴ 200
0
votes
0
replies
1.2k
views
segmentation fault in rma.background.correct()
GO
Preprocessing
AgiMicroRna
GO
Preprocessing
AgiMicroRna
11.6 years ago
Axel Klenk
★ 1.0k
0
votes
0
replies
1.2k
views
Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO
AgiMicroRna
GO
AgiMicroRna
11.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.7k
views
AgiMicroRna for new Agilent Chip format
Microarray
GO
limma
PROcess
microRNA
AgiMicroRna
Microarray
GO
limma
PROcess
microRNA
11.2 years ago
Gordon Smyth
50k
0
votes
0
replies
1.1k
views
Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna
linear model
8.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
997
views
AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
7.6 years ago
cpsingh9
• 0
36 results • Page
1 of 1
Recent ...
Replies
Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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