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Agilent
•
reset
3
votes
4
replies
5.1k
views
LIMMA and Agilent single color
Annotation
probe
limma
agilent
13.4 years ago • updated 7.3 years ago
Gordon Smyth
50k
2
votes
1
reply
3.9k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent
whole Human Genome Microarray 4X44K
annotationdbi
bioconductor
8.5 years ago
Konstantinos Yeles
▴ 80
3
votes
3
replies
3.9k
views
Negative values after normalizing an agilent microarray dataset with limma
limma
agilent
offset
background correction
microarray
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
Konstantinos Yeles
▴ 80
6
votes
4
replies
3.1k
views
AnnotationData Packages for Agilent microarrays
microarray
annotation
limma
.db
Agilent
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
Alexander Azarian
▴ 30
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Jahn Davik
▴ 110
0
votes
2
replies
2.5k
views
which Agilent annotation db?
agilent
annotation
8.9 years ago
Frederico Moraes Ferreira
▴ 100
3
votes
9
replies
2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma
annotation
agilent
hgug4112a
microarray
8.2 years ago
Konstantinos Yeles
▴ 80
0
votes
9
replies
2.3k
views
Question about Agilent microarray data measurement
Agilent
limma
scan.upc
microarray
7.5 years ago
Maximilian
▴ 10
2
votes
4
replies
2.3k
views
a question about input agilent single-channel data to R and analyze
Agilent
microarray
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
nku.corlu.ce
• 0
1
vote
12
replies
2.2k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma
avereps
probe mapping
microarray
Agilent
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
wd
▴ 30
1
vote
2
replies
2.1k
views
summarization for G4110B two colors agilent array: how to?
marray
agilent
twochannel
normalization
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Andrea Grilli
▴ 240
2
votes
2
replies
2.1k
views
Analysing two-channel Agilent microarray data
limma
microarray
agilent
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
joanna.goscik
• 0
1
vote
2
replies
2.0k
views
Normalize between Arrays (Agilent two color)
limma
agilent
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
a.weig
• 0
2
votes
5
replies
2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna
agilent
limma
microarray
mirna
updated 8.6 years ago by
Jim Java
▴ 30 • written 8.6 years ago by
santi.cabellos
▴ 10
2
votes
11
replies
2.0k
views
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma
agilent
6.1 years ago
CantExitVIM
▴ 10
3
votes
9
replies
2.0k
views
Single channel analysis of two-color agilent array using limma
agilent
limma
twochannel
microarray
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
pm2015
• 0
0
votes
2
replies
1.9k
views
Agilent Data Normalization Method
limma
agilent
updated 8.5 years ago by
Gordon Smyth
50k • written 8.5 years ago by
nvayin
• 0
0
votes
7
replies
1.8k
views
Help with diff. expression analysis of Agilent files
microarray
agilent
differential gene expression
R
updated 6.9 years ago by
Axel Klenk
★ 1.0k • written 6.9 years ago by
bhgyu
▴ 30
0
votes
3
replies
1.7k
views
problem with update limma - green channel missing
limma
bioconductor
read.maimages
agilent
8x60K
9.2 years ago
wd
▴ 30
0
votes
1
reply
1.6k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent
microarray
annotation
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
felix.klein
▴ 150
5
votes
10
replies
1.6k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma
limma design matrix
agilent
twochannel
8.2 years ago
pm2015
• 0
0
votes
2
replies
1.4k
views
Annotation package for Agilent Human G4110A chip
Agilent
annotation
updated 9.2 years ago by
Gordon Smyth
50k • written 16.1 years ago by
Tim Smith
★ 1.1k
1
vote
2
replies
1.3k
views
BioMart Attributes/Filters missing
microarray
agilent
biomart
annotation
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
terka
• 0
2
votes
3
replies
1.3k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma
2-dye
agilent
common reference
design
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
Guido Hooiveld
★ 3.9k
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma
agilent
microarray
lmfit
model.matrix
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
Maximilian
▴ 10
0
votes
2
replies
1.3k
views
microarray agilent data
microarray
agilent
limma
updated 8.8 years ago by
arfranco
▴ 130 • written 8.8 years ago by
evoke
• 0
3
votes
4
replies
1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma
agilent
microarray
covariates
updated 6.0 years ago by
Gordon Smyth
50k • written 6.0 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
1.1k
views
replacement package Agi4x44PreProcess
microarray
agilent
updated 8.8 years ago by
Axel Klenk
★ 1.0k • written 8.8 years ago by
marco fabbri
▴ 320
0
votes
1
reply
1.1k
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray
annotation
agilent
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
jarod_v6@libero.it
▴ 40
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma
agilent
arrayexpress
updated 6.1 years ago by
Gordon Smyth
50k • written 6.1 years ago by
trandiemnghi
• 0
0
votes
7
replies
1.0k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent
limma
2.8 years ago
AB
• 0
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent
agimicrorna
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ahadli.farid
▴ 30
1
vote
2
replies
957
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
CantExitVIM
▴ 10
0
votes
0
replies
786
views
Processing of agilent data
agilent
6.2 years ago
Agaz Hussain Wani
▴ 260
3
votes
1
reply
768
views
Create a '.db' package for agilent
R
agilent
microarray
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
salamandra
▴ 20
0
votes
1
reply
684
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr
raw
Agilent
MicroarrayData
import
updated 2.5 years ago by
Gordon Smyth
50k • written 2.5 years ago by
irina.st.louis4
• 0
0
votes
1
reply
663
views
Compare different cell lines with tissues using limma
limma
MicroarrayData
Microarray
Agilent
updated 22 months ago by
Gordon Smyth
50k • written 22 months ago by
Sam
• 0
37 results • Page
1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
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Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
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by
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• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
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IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
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swbarnes2
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
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