Showing : Agilent • reset
6
votes
4
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3.1k
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AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 30
5
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10
replies
1.6k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.2 years ago pm2015 • 0
3
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4
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5.1k
views
LIMMA and Agilent single color
Annotation probe limma agilent
13.4 years ago • updated 7.3 years ago Gordon Smyth 50k
3
votes
9
replies
2.0k
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Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
3
votes
1
reply
765
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Create a '.db' package for agilent
R agilent microarray
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
3
votes
4
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1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
3
votes
3
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3.9k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 80
3
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9
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2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.2 years ago Konstantinos Yeles ▴ 80
2
votes
1
reply
3.9k
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Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.5 years ago Konstantinos Yeles ▴ 80
2
votes
11
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2.0k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.1 years ago CantExitVIM ▴ 10
2
votes
5
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2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 10
2
votes
3
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1.3k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 8.4 years ago by 65k • written 8.4 years ago by ★ 3.9k
2
votes
4
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3.0k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
2
votes
2
replies
2.1k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 9.4 years ago by 50k • written 9.4 years ago by • 0
2
votes
4
replies
2.3k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
1
vote
2
replies
2.1k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
1
vote
2
replies
2.0k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
1
vote
2
replies
1.3k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
1
vote
2
replies
956
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
1
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2
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1.0k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
1
vote
12
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2.2k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 30
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.4 years ago by 50k • written 7.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 40
0
votes
7
replies
1.8k
views
Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 6.9 years ago by ★ 1.0k • written 6.9 years ago by ▴ 30
0
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0
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784
views
Processing of agilent data
agilent
6.2 years ago Agaz Hussain Wani ▴ 260
0
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2
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2.5k
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which Agilent annotation db?
agilent annotation
8.9 years ago Frederico Moraes Ferreira ▴ 100
0
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2
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1.4k
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Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 9.2 years ago by 50k • written 16.1 years ago by ★ 1.1k
0
votes
3
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1.7k
views
problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.2 years ago wd ▴ 30
0
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7
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1.0k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.8 years ago AB • 0
0
votes
1
reply
684
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.5 years ago by 50k • written 2.5 years ago by • 0
0
votes
1
reply
659
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 22 months ago by 50k • written 22 months ago by • 0
0
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1
reply
1.6k
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Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 9.2 years ago by 50k • written 9.2 years ago by ▴ 150
0
votes
2
replies
1.9k
views
Agilent Data Normalization Method
limma agilent
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
0
votes
2
replies
1.3k
views
microarray agilent data
microarray agilent limma
updated 8.8 years ago by ▴ 130 • written 8.8 years ago by • 0
0
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1
reply
1.1k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.8 years ago by ★ 1.0k • written 8.8 years ago by ▴ 320
0
votes
9
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2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.5 years ago Maximilian ▴ 10
37 results • Page 1 of 1
Recent ...
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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp by Basti ▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
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Answer: OrgDb for maize
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Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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