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AgimicroRNA
•
reset
0
votes
8
replies
1.8k
views
AgiMicroRna problems
Normalization
PROcess
microRNA
AgiMicroRna
Normalization
PROcess
microRNA
AgiMicroRna
13.6 years ago
Mark Cowley
▴ 910
0
votes
6
replies
1.3k
views
AgiMicroRna and Replicates
AgiMicroRna
AgiMicroRna
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
6
replies
1.8k
views
Normalisation of Agilent microRNA arrays using inbuilt controls?
GO
Cancer
vsn
AgiMicroRna
GO
Cancer
vsn
AgiMicroRna
updated 14.2 years ago by
Wei Shi
★ 3.6k • written 14.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
6
replies
1.5k
views
Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx
AgiMicroRna
bgx
AgiMicroRna
updated 12.2 years ago by
Lucas Santana dos Santos
▴ 60 • written 12.2 years ago by
Karthik K N
▴ 200
0
votes
4
replies
1.3k
views
Model variable optimisation
Regression
probe
limma
AgiMicroRna
Regression
probe
limma
AgiMicroRna
updated 13.8 years ago by
Steve Shen
▴ 330 • written 13.8 years ago by
Tony McBryan
▴ 60
0
votes
4
replies
1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization
GeneSpring
microRNA
AgiMicroRna
Normalization
GeneSpring
microRNA
AgiMicroRna
updated 11.7 years ago by
Paul Geeleher
★ 1.3k • written 11.7 years ago by
Seyit Ali KAYIS
▴ 30
0
votes
4
replies
1.6k
views
Loading data into AgiMicroRna
AgiMicroRna
AgiMicroRna
updated 13.5 years ago by
Neel Aluru
▴ 460 • written 13.5 years ago by
Steve Taylor
▴ 280
0
votes
3
replies
1.2k
views
Agilent Array Analysis Question
affy
limma
Agi4x44PreProcess
AgiMicroRna
affy
limma
Agi4x44PreProcess
AgiMicroRna
updated 14.4 years ago by
Francois Pepin
★ 1.3k • written 14.4 years ago by
Sunny Srivastava
▴ 350
0
votes
3
replies
2.6k
views
Access to Source Codes of Packges
limma
AgiMicroRna
limma
AgiMicroRna
updated 11.9 years ago by
Sean Davis
21k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
3
replies
1.5k
views
AgiMicroRna with single channel Agilent Array
AgiMicroRna
AgiMicroRna
12.8 years ago
John Lande
▴ 280
0
votes
3
replies
1.2k
views
AgiMicroRna problems
miRNA
Normalization
FeatureExtraction
PROcess
microRNA
AgiMicroRna
miRNA
Normalization
updated 13.6 years ago by
Mike Walter
▴ 230 • written 13.6 years ago by
Mark Cowley
▴ 910
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent
agimicrorna
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ahadli.farid
▴ 30
0
votes
2
replies
1.3k
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray
Network
microRNA
AgiMicroRna
Microarray
Network
microRNA
AgiMicroRna
updated 14.1 years ago by
Alberto Goldoni
▴ 60 • written 14.1 years ago by
Sean Davis
21k
1
vote
2
replies
1.1k
views
Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
6.6 years ago
neelakandanbt
• 0
0
votes
2
replies
1.3k
views
problems in reading a file in AgiMicroRna package
agimicrorna
read.agimicrorna
agilent microarrays
updated 6.5 years ago by
Axel Klenk
★ 1.0k • written 6.6 years ago by
neelakandanbt
• 0
0
votes
1
reply
1.2k
views
AgiMicroRna problem
Annotation
microRNA
AgiMicroRna
Annotation
microRNA
AgiMicroRna
updated 13.2 years ago by
Paulo Nuin
▴ 200 • written 13.2 years ago by
Pedro Lopez-Romero
▴ 120
0
votes
1
reply
1.2k
views
AgiMicroRna and readMicroRnaFE
miRNA
AgiMicroRna
miRNA
AgiMicroRna
updated 13.7 years ago by
Richard Friedman
★ 2.0k • written 13.7 years ago by
Paulo Nuin
▴ 200
0
votes
1
reply
1.7k
views
AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO
AgiMicroRna
GO
AgiMicroRna
updated 11.2 years ago by
Axel Klenk
★ 1.0k • written 11.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess
AgiMicroRna
PROcess
AgiMicroRna
updated 14.0 years ago by
Seth Falcon
★ 7.4k • written 14.0 years ago by
heyi xiao
▴ 360
0
votes
1
reply
1.0k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer
probe
AgiMicroRna
Cancer
probe
AgiMicroRna
updated 13.9 years ago by
Pedro López Romero
▴ 360 • written 13.9 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
561
views
Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
topijush
▴ 10
0
votes
1
reply
791
views
Installing AgiMicroRna Package
AgiMicroRna
AgiMicroRna
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Karthik K N
▴ 200
0
votes
1
reply
846
views
AgiMicroRna package error message
Normalization
microRNA
AgiMicroRna
Normalization
microRNA
AgiMicroRna
13.9 years ago
Wang, Yonghong NIH/NCI
▴ 60
0
votes
0
replies
973
views
Limma - batch issues
miRNA
Microarray
limma
PROcess
AgiMicroRna
miRNA
Microarray
limma
PROcess
AgiMicroRna
12.8 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
1.4k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA
zebrafish
probe
AgiMicroRna
miRNA
zebrafish
probe
AgiMicroRna
13.9 years ago
Neel Aluru
▴ 460
0
votes
0
replies
689
views
mvaPlots of RMA normalized data in AgiMicroRNA
Cancer
AgiMicroRna
Cancer
AgiMicroRna
13.9 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
722
views
AgiMicroRna and ComBat
miRNA
probe
AgiMicroRna
miRNA
probe
AgiMicroRna
13.8 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
767
views
ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
13.2 years ago
Paola Ostano
▴ 10
0
votes
0
replies
1.1k
views
Agi4x44PreProcess
GUI
zebrafish
probe
AgiMicroRna
GUI
zebrafish
probe
AgiMicroRna
13.6 years ago
Neel Aluru
▴ 460
0
votes
0
replies
810
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe
microRNA
AgiMicroRna
probe
microRNA
AgiMicroRna
12.8 years ago
Viki S
▴ 20
0
votes
0
replies
1.1k
views
Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe
AgiMicroRna
probe
AgiMicroRna
12.2 years ago
Karthik K N
▴ 200
0
votes
0
replies
1.2k
views
segmentation fault in rma.background.correct()
GO
Preprocessing
AgiMicroRna
GO
Preprocessing
AgiMicroRna
11.7 years ago
Axel Klenk
★ 1.0k
0
votes
0
replies
1.2k
views
Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO
AgiMicroRna
GO
AgiMicroRna
11.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.7k
views
AgiMicroRna for new Agilent Chip format
Microarray
GO
limma
PROcess
microRNA
AgiMicroRna
Microarray
GO
limma
PROcess
microRNA
11.2 years ago
Gordon Smyth
50k
0
votes
0
replies
1.1k
views
Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna
linear model
8.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
997
views
AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
7.6 years ago
cpsingh9
• 0
36 results • Page
1 of 1
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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