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AllelicImbalance
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5
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7
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2.0k
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Allele Specific Expression Using edgeR
edger
allelicimbalance
7.9 years ago
ugwu.nelson
▴ 10
0
votes
2
replies
1.4k
views
Error using 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.8 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
4
replies
1.4k
views
AllelicImbalance with VCFs?
RNASeq
Cancer
trio
AllelicImbalance
RNASeq
Cancer
trio
AllelicImbalance
updated 10.2 years ago by
Jesper Robert Gadin
▴ 20 • written 10.2 years ago by
Tim Triche, Jr.
▴ 10
0
votes
2
replies
1.3k
views
Error message from 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.8 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
2
replies
1.2k
views
AllelicImbalance error with getAlleleCounts
allelicimbalance
getallelecounts
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
JK
▴ 10
0
votes
1
reply
1.1k
views
AlleicImbalance error reading in BAM files
allelicimbalance
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
JK
▴ 10
1
vote
1
reply
956
views
Does the AI package also allow more than one seqlevel?
AllelicImbalance
updated 8.4 years ago by
lasfol
▴ 10 • written 8.4 years ago by
sannysandra93
• 0
1
vote
1
reply
923
views
DESeq2 for allele-specific expression with contrasts between conditions
DESeq2
AllelicImbalance
edgeR
RNASeq
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
Katya
• 0
8 results • Page
1 of 1
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Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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