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AllelicImbalance
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5
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7
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2.1k
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Allele Specific Expression Using edgeR
edger
allelicimbalance
8.0 years ago
ugwu.nelson
▴ 10
1
vote
1
reply
975
views
Does the AI package also allow more than one seqlevel?
AllelicImbalance
updated 8.5 years ago by
lasfol
▴ 10 • written 8.5 years ago by
sannysandra93
• 0
1
vote
1
reply
955
views
DESeq2 for allele-specific expression with contrasts between conditions
DESeq2
AllelicImbalance
edgeR
RNASeq
updated 2.8 years ago by
Michael Love
41k • written 2.9 years ago by
Katya
• 0
0
votes
2
replies
1.3k
views
Error message from 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.2 years ago by
JK
▴ 10
0
votes
4
replies
1.4k
views
AllelicImbalance with VCFs?
RNASeq
Cancer
trio
AllelicImbalance
RNASeq
Cancer
trio
AllelicImbalance
updated 10.3 years ago by
Jesper Robert Gadin
▴ 20 • written 10.3 years ago by
Tim Triche, Jr.
▴ 10
0
votes
2
replies
1.4k
views
Error using 'scanForHeterozygotes' function in AllelicImbalance package
allelicimbalance
updated 8.9 years ago by
Jesper Robert Gadin
▴ 20 • written 9.1 years ago by
JK
▴ 10
0
votes
1
reply
1.1k
views
AlleicImbalance error reading in BAM files
allelicimbalance
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
JK
▴ 10
0
votes
2
replies
1.2k
views
AllelicImbalance error with getAlleleCounts
allelicimbalance
getallelecounts
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
JK
▴ 10
8 results • Page
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Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
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No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …
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You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…
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41k
This is discussed in the paper, that you will still have some non-zero estimates even when the true value of log dispersion is negative inf…
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