Biostar Anaquin

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deseq2 ruvseq anaquin sequins

updated 3.1 years ago by Michael Love 37k • written 3.1 years ago by chaitra.sathyaprakash • 0

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sequin correlations error bars plotLinear Anaquin

3.0 years ago William.Glynn • 0

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anaquin plotroc

updated 3.0 years ago by Martin Morgan 25k • written 3.0 years ago by William.Glynn • 0

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Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10

Regarding GSEA preranking metric approaches, what I’ve seen, including in this thread, is that many (or most) seem to do either `logFC` or …

Comment: GSEA preranked analysis downstream of DEseq2 by Michael Love 37k

That's fine I guess. I don't know what the meaning of that term is, which is a downside in my opinion. A posterior effect size is an esti…

Answer: DESeq2 LFC changes sign after adjusting for surrogates by Michael Love 37k

Yes, controlling for covariates can change the sign of the estimated coefficient. I'd recommend to use the code in the vignette for rem…

Answer: DESeq2 design with 6 groups by Michael Love 37k

I have to restrict my time on the support site for software related questions. For statistical consultation, e.g. how should i set up my an…

Comment: Which is the best type of data for correlation or survival analysis by Michael Love 37k

I don't know what is optimal for survival analysis. We basically have our transformations and the motivation for them (see the workflow for…

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Comment: Detection of reference genes by Deseq2

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Teacher to Michael Love 37k

Scholar to Aaron Lun ★ 27k