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Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
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sandmann.t
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Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
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0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
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Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
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0
Hello James,
Thank you very much for your answer and taking the time to read my post.
I understand your remark, but isn't the approach o…
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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James W. MacDonald
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You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
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