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Recent ...
Replies
Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl
by
James W. MacDonald
67k
Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.
Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl
by
bioinformata
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0
Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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James W. MacDonald
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Hi Guido,
It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …
Comment: AffylmGUI does not start wit R 4.4.1
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Gordon,
I found out what went wrong. The problem was that the xquartz distribution for mac from cran did not include tcltk! I found that b…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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Guido Hooiveld
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Hi James,
I am likely missing something obvious, but why is the code that I used returning a different number of genes having a GOALL-BP a…
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