Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Annotationhub
•
reset
11
votes
13
replies
2.9k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
2.8 years ago • updated 2.6 years ago
rohitsatyam102
▴ 20
9
votes
21
replies
13k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub
dplyr
updated 13 months ago by
SmallChess
▴ 10 • written 2.9 years ago by
georgia.katsoula
▴ 40
8
votes
9
replies
4.0k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 20 months ago by
Hervé Pagès
16k • written 20 months ago by
jon.klonowski
▴ 40
8
votes
4
replies
4.0k
views
Tutorial:
Epigenomics RoadMap Project files now accessible via AnnotationHub
AnnotationHub
Epigenomics
BigData
RoadMap Project
NIH
Tutorial
updated 6.4 years ago by
vanesa_1230
• 0 • written 8.3 years ago by
Sonali Arora
▴ 390
8
votes
16
replies
4.0k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.1 years ago by
shepherl
3.5k • written 3.1 years ago by
enricoferrero
▴ 660
7
votes
25
replies
3.5k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 14 days ago by
Bruno
• 0 • written 4.8 years ago by
Guido Hooiveld
★ 3.7k
7
votes
44
replies
3.9k
views
OrgDB download failed via AnnotationHub
annotationhub
orgdb
updated 4.2 years ago by
shepherl
3.5k • written 4.3 years ago by
chirag.parsania
• 0
7
votes
11
replies
6.1k
views
Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
edgeR
limma
annotationhub
kegga
annotationdbi
updated 7.2 years ago by
cagenet34
▴ 20 • written 7.5 years ago by
Rinaldo Bertossa
▴ 20
5
votes
11
replies
2.1k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 6.8 years ago by
Levi Waldron
1.1k • written 6.8 years ago by
morganx
▴ 10
5
votes
4
replies
1.1k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
5.4 years ago
slinker
▴ 20
5
votes
2
replies
1.0k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
6.8 years ago
wcstcyx
▴ 30
4
votes
3
replies
1.7k
views
Error installing AnnotationHub on Fedora
Annotationhub
curl
httr
fedora
updated 7.4 years ago by
anastazie.d
▴ 20 • written 8.0 years ago by
barashe
▴ 10
4
votes
8
replies
1.3k
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
21 months ago • updated 16 months ago
nattzy94
▴ 20
4
votes
17
replies
1.9k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 3.1 years ago by
Kevin Blighe
3.8k • written 3.1 years ago by
Didi
▴ 10
4
votes
7
replies
1.3k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Michael Love
40k
4
votes
6
replies
1.5k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub
OrganismDbi
org.Hs.eg.db
updated 18 months ago by
Gordon Smyth
48k • written 18 months ago by
Nathan
• 0
4
votes
10
replies
1.1k
views
Suggestion: spinning wheel for AnnotationHub
annotationhub
updated 6.0 years ago by
shepherl
3.5k • written 6.1 years ago by
Michael Love
40k
4
votes
1
reply
3.4k
views
getting the longest transcript by gene from Refseq
refseq
annotationhub
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
dalloliogm
▴ 50
4
votes
2
replies
1.2k
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
3.1 years ago
Johannes Rainer
★ 2.0k
3
votes
3
replies
1.2k
views
Broken AnnotationHub resource (AH25517 | wgEncodeOpenChromDnaseGm12878Pk.narrowPeak.gz)
annotationhub
encode
updated 7.5 years ago by
Valerie Obenchain
★ 6.8k • written 7.5 years ago by
Peter Hickey
▴ 650
3
votes
4
replies
869
views
Are AH52264, AH66175, and AH70594 duplicates?
AnnotationHub
updated 3.9 years ago by
shepherl
3.5k • written 3.9 years ago by
Aditya
▴ 160
3
votes
13
replies
2.2k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub
organismdb
orgdb
unsupported organisms
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Guido Hooiveld
★ 3.7k
3
votes
0
replies
800
views
News:
EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation
ensembldb
EnsDb
AnnotationHub
News
3.8 years ago
Johannes Rainer
★ 2.0k
3
votes
2
replies
1.5k
views
Issue with AnnotationHub
AnnotationHub
2.8 years ago
rahnaman
▴ 10
3
votes
9
replies
3.5k
views
AnnotationHub corrupt database
annotationhub
updated 4.5 years ago by
shepherl
3.5k • written 8.2 years ago by
Koen Van den Berge
▴ 180
3
votes
9
replies
3.6k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 4 weeks ago by
Jerina
▴ 10 • written 2.6 years ago by
Alberto
• 0
3
votes
2
replies
1.4k
views
AnnotationHub: A RPKM data.frame of Epigenomics RoadMap Project seems strange
annotationhub
roadmap project
rpkm
data.frame
7.0 years ago • updated 6.9 years ago
wcstcyx
▴ 30
3
votes
6
replies
1.6k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 14 months ago by
shepherl
3.5k • written 3.3 years ago by
Jenny Drnevich
★ 2.0k
3
votes
1
reply
1.1k
views
AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project
annotationhub
epigenomics
big data
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
kevin.rue
▴ 320
2
votes
2
replies
1.7k
views
Normal Patient Samples from GSE62944
GSE62944
annotationhub
differentialexpression
updated 7.5 years ago by
Sonali Arora
▴ 390 • written 7.5 years ago by
hamda.binte.ajmal
• 0
2
votes
2
replies
964
views
how to choose annotation file in AnnotationHub web server
annotation
AnnotationHub
3.8 years ago
15958021290
▴ 10
2
votes
8
replies
1.5k
views
Problem fetching resources from AnnotationHub, error 403
AnnotationHub
updated 7.9 years ago by
Valerie Obenchain
★ 6.8k • written 7.9 years ago by
Johannes Rainer
★ 2.0k
2
votes
0
replies
743
views
News:
ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata
annotationhub
ensembl
gtf
2bit
News
updated 4.4 years ago by
nguyenlieuduoc
• 0 • written 4.4 years ago by
shepherl
3.5k
2
votes
0
replies
3.0k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.1 years ago
Sonali Arora
▴ 390
2
votes
10
replies
1.8k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 23 months ago by
Guido Hooiveld
★ 3.7k • written 23 months ago by
Javan Okendo
• 0
2
votes
3
replies
1.1k
views
Why No Uniprot information for some other organisms in AnnotationHub?
hub
annotationhub
updated 2.7 years ago by
shepherl
3.5k • written 7.0 years ago by
wssdandan2009
• 0
2
votes
2
replies
512
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19
rtracklayer
AnnotationHub
13 months ago • updated 12 months ago
Lenny186
• 0
2
votes
12
replies
2.7k
views
Error: failed to load 'AnnotationHub' resource
biomart
annotationhub
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
borowczak.marc
▴ 10
2
votes
6
replies
1.2k
views
R getting "stuck" with RoadMap resource retrieval through AnnotationHub
roadmap project
annotationhub
6.4 years ago
vanesa_1230
• 0
2
votes
0
replies
731
views
News:
ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
bioconductor
annotationhub
ensembl89
News
6.3 years ago
shepherl
3.5k
2
votes
8
replies
1.1k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 3.4 years ago by
James W. MacDonald
63k • written 3.4 years ago by
bnajafpour
• 0
2
votes
12
replies
2.0k
views
AnnotationHub-cant extract database
annotationhub
updated 6.5 years ago by
Valerie Obenchain
★ 6.8k • written 6.5 years ago by
ecpierce
• 0
1
vote
3
replies
2.9k
views
Problem using display() function on RStudio
display
rstudio
annotationhub
updated 8.0 years ago by
James W. MacDonald
63k • written 8.0 years ago by
barashe
▴ 10
1
vote
4
replies
914
views
AnnotationHub Server denied you to change the given directory
annotation
annotationhub
updated 4.4 years ago by
shepherl
3.5k • written 4.4 years ago by
bastien.ducreux
▴ 10
1
vote
3
replies
1.8k
views
annotation of SV (Structural Variants)
variantannotation
annotationhub
6.5 years ago
Bogdan
▴ 660
1
vote
1
reply
831
views
The total genes items (e.g. ENTREZ ID, SYMBOL) in OrgDb (Salmo salar; [["AH66207"]]) is just half the gene number in NCBI ?!
Annotationhub
Annotationdb
profiler
annotationdbi
4.4 years ago
wecai
• 0
1
vote
3
replies
720
views
Problem with AnnotationHub after crash during first download of metadata
AnnotationHub
updated 4.1 years ago by
shepherl
3.5k • written 4.1 years ago by
konstantinos.bogias
▴ 10
1
vote
3
replies
1.9k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
3.8 years ago
dmgatti
▴ 10
1
vote
7
replies
1.2k
views
mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rtracklayer
annotationhub
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
mviterson
▴ 10
1
vote
6
replies
1.9k
views
Problem with AnnotationHub()
annotationhub
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
rex.burger
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block
by
Koki
▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block
by
Koki
▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Comment: DMRcate design
by
James W. MacDonald
63k
That's what identical context means.
Votes
Answer: What MetaPhlAn3 database was used in cMD 3?
Comment: Speeding up of DelayedArray::write_block()
Answer: DelayedArray::read_sparse_block
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
sohail.mbio
▴ 10
Popular Question
to
komal.rathi
▴ 110
Popular Question
to
Levi Waldron
1.1k
Locations
• All
United States,
1 hour ago
Japan,
2 hours ago
WEHI, Melbourne, Australia,
2 hours ago
Canada,
3 hours ago
United States,
4 hours ago
Traffic: 414 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6