Showing : Annotationhub • reset
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AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 9 weeks ago by 3.1k • written 9 weeks ago by • 0
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4
replies
177
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AnnotationHub
AnnotationHub
9 weeks ago junliqilinpan • 0
4
votes
6
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376
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 11 weeks ago by 45k • written 11 weeks ago by • 0
8
votes
9
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734
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 3 months ago by 15k • written 4 months ago by ▴ 30
0
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2
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200
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AnnotationHub problem
AnnotationHub
4 months ago Jianxuan • 0
4
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8
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533
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Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
5 months ago • updated 8 days ago nattzy94 ▴ 20
1
vote
3
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366
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How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 7 months ago by ★ 5.5k • written 7 months ago by • 0
2
votes
10
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752
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 7 months ago by ★ 3.2k • written 7 months ago by • 0
0
votes
0
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159
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LRBaseDbi error
LRBaseDbi AnnotationHub
8 months ago Francois Marchildon ▴ 20
3
votes
8
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1.6k
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GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 8 weeks ago by ★ 3.2k • written 15 months ago by • 0
8
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20
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10k
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ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
18 months ago • updated 10 months ago georgia.katsoula ▴ 40
5
votes
12
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1.3k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 8 days ago by ★ 1.9k • written 3.5 years ago by ★ 3.2k
12 results • Page 1 of 1
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Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Hi Michael, I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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