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Annotationhub
•
reset
0
votes
2
replies
180
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AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 9 weeks ago by
shepherl
3.1k • written 9 weeks ago by
nhaus
• 0
0
votes
4
replies
177
views
AnnotationHub
AnnotationHub
9 weeks ago
junliqilinpan
• 0
4
votes
6
replies
376
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub
OrganismDbi
org.Hs.eg.db
updated 11 weeks ago by
Gordon Smyth
45k • written 11 weeks ago by
Nathan
• 0
8
votes
9
replies
734
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 3 months ago by
Hervé Pagès
15k • written 4 months ago by
jon.klonowski
▴ 30
0
votes
2
replies
200
views
AnnotationHub problem
AnnotationHub
4 months ago
Jianxuan
• 0
4
votes
8
replies
533
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
5 months ago • updated 8 days ago
nattzy94
▴ 20
1
vote
3
replies
366
views
How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 7 months ago by
Mike Smith
★ 5.5k • written 7 months ago by
sabermohammdi.1994
• 0
2
votes
10
replies
752
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 7 months ago by
Guido Hooiveld
★ 3.2k • written 7 months ago by
Javan Okendo
• 0
0
votes
0
replies
159
views
LRBaseDbi error
LRBaseDbi
AnnotationHub
8 months ago
Francois Marchildon
▴ 20
3
votes
8
replies
1.6k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 8 weeks ago by
Guido Hooiveld
★ 3.2k • written 15 months ago by
Alberto
• 0
8
votes
20
replies
10k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub
dplyr
18 months ago • updated 10 months ago
georgia.katsoula
▴ 40
5
votes
12
replies
1.3k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 8 days ago by
Johannes Rainer
★ 1.9k • written 3.5 years ago by
Guido Hooiveld
★ 3.2k
12 results • Page
1 of 1
Recent ...
Replies
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Hi Michael, I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq
by
Jess
• 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
Awards
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to
Gordon Smyth
45k
Teacher
to
Aaron Lun
★ 27k
Scholar
to
James W. MacDonald
59k
Popular Question
to
Lluís Revilla Sancho
▴ 660
Centurion
to
Basti
▴ 280
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