Bioconductor Annotationhub

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 15 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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4.5k

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BiocFileCache AnnotationHub ExperimentHub

updated 5 weeks ago by Melissa • 0 • written 5 months ago by shepherl 3.8k

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292

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 8 days ago by Tim Peters ▴ 170 • written 17 days ago by s.malik • 0

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1.1k

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clusterProfiler Annotationhub

updated 5 months ago by Guido Hooiveld ★ 3.9k • written 5 months ago by BS • 0

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539

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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311

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 7 weeks ago by Filipe • 0

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147

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annotatr AnnotationHub

12 weeks ago hayleyw • 0

10 results • Page 1 of 1

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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