Bioconductor Annotationhub

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4.7k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 2 days ago shepherl 3.8k

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307

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 14 days ago by Tim Peters ▴ 170 • written 22 days ago by s.malik • 0

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 21 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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5.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 6 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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320

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 8 weeks ago by Filipe • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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154

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annotatr AnnotationHub

12 weeks ago hayleyw • 0

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4.3k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 4 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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549

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

10 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0