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Annotatr
•
reset
0
votes
0
replies
147
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
12 weeks ago
hayleyw
• 0
0
votes
0
replies
137
views
annotatr rn7?
annotatr
3 months ago
chuanjiao6
• 0
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
updated 5 months ago by
Mahmoud
• 0 • written 3.3 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
510
views
custom annotations with annotatr
annotatr
11 months ago
luca.s
▴ 50
0
votes
1
reply
818
views
Problem with annotations using annotatr
annotatr
20 months ago
eric.rhoncalderon
• 0
0
votes
0
replies
689
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.3 years ago
Ahdee
▴ 50
0
votes
0
replies
789
views
annotatr with custom TxDb
GenomicFeatures
annotatr
genomicFe
3.0 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
816
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr
GenomicRanges
3.5 years ago
Nala
• 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.0 years ago
dakarai_esgdaille
▴ 10
1
vote
1
reply
1.4k
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 5.4 years ago by
rcavalca
▴ 140 • written 5.4 years ago by
sorjuelal
• 0
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.5 years ago by
rcavalca
▴ 140 • written 5.5 years ago by
soli5
• 0
0
votes
1
reply
923
views
ENSEMBL database for annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
2
votes
2
replies
1.1k
views
Unexpected results from annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
2
votes
2
replies
960
views
'fill_order' in annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
0
votes
3
replies
1.1k
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
7.2 years ago
vivianengoune
• 0
0
votes
2
replies
1.6k
views
annotatr GRanges Error
annotatr
updated 7.2 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
cguzman.roma
• 0
4
votes
2
replies
1.1k
views
Annotatr package not loading certain features
annotatr
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
divyswar01
• 0
18 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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★ 3.2k
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shepherl
3.8k
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Gordon Smyth
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