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Anova
•
reset
2
votes
2
replies
517
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
17 months ago
evan.j.williams
▴ 10
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
2.9 years ago
Antonio M.
• 0
2
votes
3
replies
1.2k
views
ANOVA Limma
ANOVA
limma
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
georgina.fqw
▴ 10
1
vote
1
reply
715
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 3.3 years ago by
ATpoint
★ 4.0k • written 3.3 years ago by
Dan
▴ 20
2
votes
4
replies
2.7k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
3.4 years ago • updated 3.3 years ago
ecg1g15
▴ 20
5
votes
13
replies
2.6k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.8 years ago by
onlychainsaw2019
• 0 • written 5.2 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1.5k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
martyna.broda
• 0
5
votes
6
replies
1.4k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
mikhael.manurung
▴ 270
3
votes
1
reply
1.0k
views
ANOVA-like test via treat() in limma
limma
anova
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
k.vitting.seerup
▴ 120
1
vote
1
reply
830
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
wewolski
▴ 10
1
vote
1
reply
735
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
raya.girish
• 0
1
vote
8
replies
1.4k
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
tarun2
• 0
0
votes
3
replies
1.3k
views
Anova test on gene expression data
Anova
gene expression
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
sally_b86
• 0
2
votes
6
replies
2.0k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 2.1 years ago by
tcalvo
▴ 90 • written 6.7 years ago by
David R
▴ 90
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
Maiv
• 0
0
votes
6
replies
4.3k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.8 years ago by
Gordon Smyth
50k • written 6.8 years ago by
pbachali
▴ 50
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Tony
• 0
1
vote
4
replies
1.4k
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 7.4 years ago by
Michael Love
41k • written 7.4 years ago by
szenitha
▴ 20
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
7.9 years ago
David
▴ 860
3
votes
4
replies
1.6k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
xiaoaozqd
• 0
2
votes
4
replies
1.4k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
kmyers2
• 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
8.7 years ago
BM
• 0
3
votes
14
replies
4.0k
views
Moderated t-test in Anova
anova
moderated t-test
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
shaheryar
• 0
8
votes
4
replies
5.7k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 8.8 years ago by
Ryan C. Thompson
★ 7.9k • written 8.8 years ago by
chickenchamp4
▴ 20
4
votes
2
replies
9.1k
views
DESeq2 LRT output help
deseq2
LRT
anova
8.9 years ago
rclaire
▴ 20
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
mmclean
• 0
2
votes
8
replies
3.7k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
chwhite
• 0
3
votes
2
replies
2.4k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
chwhite
• 0
3
votes
3
replies
9.9k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 2.4 years ago by
Michael Love
41k • written 9.5 years ago by
alex.pelletier
▴ 10
31 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Dario Strbenac
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Ankit
▴ 20
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michael.s
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James W. MacDonald
65k
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