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ArrayExpress
•
reset
0
votes
14
replies
2.2k
views
Combining data from different versions of Illumina HumanHT-12 v3
probe
limma
ArrayExpress
probe
limma
ArrayExpress
updated 13.0 years ago by
Wei Shi
★ 3.6k • written 13.0 years ago by
Gavin Koh
▴ 220
0
votes
8
replies
3.2k
views
Reading Agilent files using read.maimages
Survival
DynDoc
genefilter
tkWidgets
affy
vsn
marray
convert
ArrayExpress
Survival
affy
updated 16.7 years ago by
Scott Reagan Franklin
▴ 20 • written 16.7 years ago by
Steve Taylor
▴ 100
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.5 years ago by
Wolfgang Huber
★ 13k • written 6.6 years ago by
Bernd Klaus
▴ 610
0
votes
6
replies
1.8k
views
regarding package ArrayExpress
ArrayExpress
ArrayExpress
updated 14.6 years ago by
audrey
▴ 280 • written 14.6 years ago by
Amit Kumar
▴ 70
4
votes
5
replies
1.9k
views
time course microarray data ArrayExpress database
R
GillespieColin
ArrayExpress
import
TimeSeriesExperiment
updated 6 months ago by
jacorvar
▴ 40 • written 18 months ago by
eraldagjika
▴ 20
0
votes
5
replies
1.4k
views
Limma - GenePix
limma
ArrayExpress
limma
ArrayExpress
updated 14.8 years ago by
john seers IFR
▴ 810 • written 14.8 years ago by
Gordon Smyth
50k
0
votes
5
replies
1.5k
views
Combining data from different versions of Illumina HumanHT-12 v3
Normalization
probe
limma
safe
ArrayExpress
Normalization
probe
limma
safe
ArrayExpress
updated 13.0 years ago by
Wei Shi
★ 3.6k • written 13.0 years ago by
Gavin Koh
▴ 220
0
votes
5
replies
3.2k
views
loading processed data into eset class
ArrayExpress
ArrayExpress
updated 13.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.7 years ago by
Zhe Liu
▴ 90
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Yovanny Izquierdo Núñez
▴ 20
6
votes
5
replies
3.1k
views
How to analyze correctly agilent two-colour microarray data from the ArrayExpress repository with the limma R package
agilent microarrays
limma
arrayexpress
NChannelSet
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
svlachavas
▴ 830
0
votes
5
replies
1.8k
views
arrayExpress: problem running code from the vignette
arrayexpress
8.0 years ago
kevin.rue
▴ 350
0
votes
5
replies
1.9k
views
XML package - 500 internal server error
GEOquery
ArrayExpress
GEOquery
ArrayExpress
updated 11.0 years ago by
Sean Davis
21k • written 11.0 years ago by
boczniak767
▴ 720
1
vote
4
replies
1.9k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress
geoquery
geneexpression
updated 6.0 years ago by
Sean Davis
21k • written 6.0 years ago by
arbet003
▴ 10
3
votes
4
replies
2.9k
views
lm.fit incompatible dimensions
oligo
arrayexpress
limma
updated 4.2 years ago by
Anna Woods
• 0 • written 5.3 years ago by
maxininfa
• 0
0
votes
4
replies
1.0k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation
Normalization
Cancer
limma
ArrayExpress
Annotation
Normalization
Cancer
limma
updated 15.5 years ago by
Ming YI [Contr]
▴ 30 • written 15.5 years ago by
Gordon Smyth
50k
0
votes
3
replies
1.4k
views
Differential Expression of c.diff. microarray
arrayexpress
differential expression
9.0 years ago
SSK
▴ 10
0
votes
3
replies
1.1k
views
mageml
ArrayExpress
ArrayExpress
updated 20.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 20.5 years ago by
Cary Miller
▴ 20
2
votes
3
replies
2.0k
views
ArrayExpress unable to find raw data: "Experiment has no raw files available"
arrayexpress
updated 7.4 years ago by
ugis
▴ 20 • written 7.4 years ago by
Keith Hughitt
▴ 180
2
votes
3
replies
1.6k
views
Could not access the Bioconductor repository
bioconductor
proxy
arrayexpress
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
maxininfa
• 0
0
votes
3
replies
1.4k
views
Error loading ArrayExpress in R 2.12 Mac
ArrayExpress
ArrayExpress
updated 13.5 years ago by
Sean Davis
21k • written 13.5 years ago by
Michael Dondrup
▴ 550
0
votes
3
replies
1.1k
views
Reg: normalization of ArrayExpress data
Microarray
Normalization
GO
ArrayExpress
Microarray
Normalization
GO
ArrayExpress
14.1 years ago
Rohit Farmer
▴ 170
2
votes
2
replies
788
views
Simple queryAE command returning "Error: 1: Document is empty"
queryAE
ArrayExpress
17 months ago
alekeuro
▴ 10
0
votes
2
replies
995
views
About ArrayExpress MAGE-TAB tools
Microarray
GEOquery
ArrayExpress
Microarray
GEOquery
ArrayExpress
updated 15.9 years ago by
audrey
▴ 280 • written 15.9 years ago by
li lilingdu
▴ 450
0
votes
2
replies
1.4k
views
Importing "Detailed sample annotation" from ArrayExpress DB into R
ArrayExpress
ArrayExpress
15.7 years ago
Markus Schmidberger
▴ 380
0
votes
2
replies
1.3k
views
Limma - GenePix
ArrayExpress
ArrayExpress
updated 14.8 years ago by
john seers IFR
▴ 810 • written 14.8 years ago by
Juana Arco
▴ 20
0
votes
2
replies
2.2k
views
ArrayExpress as NChannelSet data into limma-compatible type
limma
convert
ArrayExpress
SJava
limma
convert
ArrayExpress
SJava
updated 14.6 years ago by
Martin Morgan
25k • written 14.6 years ago by
Chris Fjell
▴ 60
0
votes
2
replies
1.1k
views
rma error on an affyBatch from ArrayExpress?
ArrayExpress
ArrayExpress
updated 14.6 years ago by
Martin Morgan
25k • written 14.6 years ago by
Ross Lazarus
▴ 90
0
votes
2
replies
954
views
Annotating Illumina Data from ArrayExpress
convert
ArrayExpress
convert
ArrayExpress
updated 14.4 years ago by
Marc Carlson
★ 7.2k • written 14.4 years ago by
Md.Mamunur Rashid
▴ 260
0
votes
2
replies
1.1k
views
Reading SMD data in limma
limma
ArrayExpress
limma
ArrayExpress
13.9 years ago • updated 13.8 years ago
Gordon Smyth
50k
0
votes
2
replies
1.9k
views
ArrayExpress: missing cdf environment!
Cancer
hgu133a
cdf
ArrayExpress
Cancer
hgu133a
cdf
ArrayExpress
updated 13.5 years ago by
Wolfgang Huber
★ 13k • written 13.5 years ago by
Daniel Rico
▴ 110
0
votes
2
replies
1.3k
views
Problem importing ArrayExpress data for custom array into BioConductor
Microarray
cdf
ArrayExpress
Microarray
cdf
ArrayExpress
updated 13.5 years ago by
Wolfgang Huber
★ 13k • written 13.5 years ago by
Aatish
▴ 10
0
votes
2
replies
2.3k
views
comparing HG-U219 data to HG-U133 data from public databases
Normalization
convert
ArrayExpress
Normalization
convert
ArrayExpress
updated 13.1 years ago by
Sole Acha, Xavi
▴ 110 • written 13.1 years ago by
Andreas Heider
▴ 340
0
votes
2
replies
1.8k
views
Odd warning in simpleaffy, using quality control
cdf
probe
simpleaffy
ArrayExpress
cdf
probe
simpleaffy
ArrayExpress
updated 12.1 years ago by
David Westergaard
▴ 280 • written 12.2 years ago by
boczniak767
▴ 720
0
votes
2
replies
1.3k
views
Error when using impute to get missing values
impute
ArrayExpress
impute
ArrayExpress
updated 12.1 years ago by
Tim Triche
★ 4.2k • written 12.1 years ago by
David Westergaard
▴ 10
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
Ed Siefker
▴ 230
0
votes
2
replies
1.2k
views
Regarding ArrayExpress package
microarray
arrayexpress
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
akanksha17arora
• 0
1
vote
2
replies
995
views
limma - removing samples?
ArrayExpress
limma
arrays
2.9 years ago
RMP87
• 0
3
votes
2
replies
1.1k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData
ArrayExpress
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
Gero
• 0
4
votes
2
replies
1.3k
views
TargetsFile. Where it is?
Limma
ArrayExpress
GEO
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Gero
• 0
0
votes
1
reply
1.2k
views
CodeLink Package: Not a Codelink exported file.
codelink
ArrayExpress
codelink
ArrayExpress
updated 18.0 years ago by
Diego Diez
▴ 760 • written 18.0 years ago by
Srinivas Iyyer
▴ 600
0
votes
1
reply
1.5k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics
ArrayExpress
arrayQualityMetrics
ArrayExpress
updated 10.1 years ago by
Wolfgang Huber
★ 13k • written 10.2 years ago by
Laurent.Pays
▴ 20
0
votes
1
reply
1.6k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray
cdf
probe
makecdfenv
RMAGEML
ArrayExpress
Microarray
cdf
probe
makecdfenv
updated 10.1 years ago by
James W. MacDonald
65k • written 10.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
ArrayExpress (finding differential expression using bioconductor+C)
arrayexpress
differential expression
9.0 years ago
SSK
▴ 10
0
votes
1
reply
969
views
magetab2bioc error
ArrayExpress
ArrayExpress
updated 13.1 years ago by
Wolfgang Huber
★ 13k • written 13.1 years ago by
pratibha mani
▴ 10
0
votes
1
reply
1.9k
views
Error while reading ArrayExpress dataset
arrayexpress
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
Srinivasa R. Rao
• 0
0
votes
1
reply
949
views
Query regarding GEO Database
ArrayExpress
ArrayExpress
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
varpal singh
▴ 120
0
votes
1
reply
1.5k
views
Combining data from different versions of Illumina HumanHT-12 v3
Normalization
probe
safe
ArrayExpress
Normalization
probe
safe
ArrayExpress
updated 13.0 years ago by
Wei Shi
★ 3.6k • written 13.0 years ago by
Gavin Koh
▴ 220
0
votes
1
reply
796
views
Unable to get the Platform Table using fData on eset object
ArrayExpress
ArrayExpress
updated 14.0 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Sailu Yellaboina
▴ 30
0
votes
1
reply
945
views
making ExpressionSet from ArrayExpress
convert
ArrayExpress
convert
ArrayExpress
updated 17.3 years ago by
Steffen Durinck
▴ 580 • written 17.3 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
ste0891
• 0
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