Bioconductor BAMBU

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bambu

updated 17 months ago by Jonathan Göke ▴ 50 • written 17 months ago by Sheetal • 0

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BAMBU bambu

19 months ago Seongwoo Han ▴ 10

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BAMBU bambu

updated 19 months ago by Andre ▴ 20 • written 19 months ago by Seongwoo Han ▴ 10

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679

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BAMBU bambu

updated 17 months ago by Sheetal • 0 • written 19 months ago by Seongwoo Han ▴ 10

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668

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txdb bambu

updated 10 months ago by andre_sim ▴ 20 • written 10 months ago by camilia.savitri • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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