Bioconductor BAMBU

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664

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txdb bambu

updated 9 months ago by andre_sim ▴ 20 • written 9 months ago by camilia.savitri • 0

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539

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bambu

updated 17 months ago by Jonathan Göke ▴ 50 • written 17 months ago by Sheetal • 0

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673

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BAMBU bambu

updated 17 months ago by Sheetal • 0 • written 19 months ago by Seongwoo Han ▴ 10

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532

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BAMBU bambu

updated 18 months ago by Andre ▴ 20 • written 19 months ago by Seongwoo Han ▴ 10

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544

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BAMBU bambu

19 months ago Seongwoo Han ▴ 10

5 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks again for your answer, I will try to play a little bit with the parameters. Only one thing, my data are actually CpG methylation :)…

Comment: flowStats Search Error by tholmes • 0

Thank you so much!

Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Votes

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

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