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BED
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.4 years ago
Dimitris Polychronopoulos
▴ 80
9
votes
9
replies
5.3k
views
Importing a BED file with floating point scores?
rtracklayer
bed
updated 3.2 years ago by
merv
▴ 120 • written 8.0 years ago by
Ryan C. Thompson
★ 7.9k
5
votes
2
replies
1.2k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
1
reply
1.6k
views
Plot per-base-coverage output of a bed file of whole genome
coverage
bed
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
sgupt46
• 0
1
vote
2
replies
1.2k
views
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer
bed
software error
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
Ryan C. Thompson
★ 7.9k
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
0
votes
1
reply
1.4k
views
comparing 2 long BED files in R in an efficient way
bed
vcf
updated 5.8 years ago by
GENOMIC_region
• 0 • written 5.8 years ago by
Bogdan
▴ 670
0
votes
7
replies
1.2k
views
rtracklayer cannot export empty BED file
rtracklayer
bed
genomicranges
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
foehn
▴ 100
0
votes
1
reply
886
views
Change the interval of bed file
mappability
bed
python
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
the
• 0
3
votes
4
replies
1.1k
views
Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
17 months ago
L
▴ 50
4
votes
5
replies
5.4k
views
Convert an R data.frame to a bed file in R
rtracklayer
R
bed
updated 15 months ago by
Walters
• 0 • written 21 months ago by
L
▴ 50
1
vote
4
replies
2.6k
views
rtracklayer::import()-ing .bed.gz files from a URL
rtracklayer
import
bed
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Peter Hickey
▴ 740
0
votes
3
replies
896
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
sat
• 0
0
votes
0
replies
782
views
Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 170
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.1 years ago
mjsduncan
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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