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readTranscriptFeatures R genomation bed

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by sat • 0

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bed bigBed rtracklayer ucsc

17 months ago L ▴ 50

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rtracklayer R bed

updated 15 months ago by Walters • 0 • written 20 months ago by L ▴ 50

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885

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mappability bed python

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by the • 0

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rtracklayer bed

updated 3.2 years ago by merv ▴ 120 • written 8.0 years ago by Ryan C. Thompson ★ 7.9k

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rtracklayer bed genomicranges

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by foehn ▴ 100

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sushi bed

5.6 years ago maltethodberg ▴ 170

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bed vcf

updated 5.8 years ago by GENOMIC_region • 0 • written 5.8 years ago by Bogdan ▴ 670

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granges bed genomicranges genomeintervals deseq2

6.3 years ago rbronste ▴ 60

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rtracklayer bed software error

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Ryan C. Thompson ★ 7.9k

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coverage bed

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by sgupt46 • 0

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annotationhub bugs encode bed

7.4 years ago wcstcyx ▴ 30

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rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

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gviz BED Ucsc UcscTrack

8.3 years ago Andy91 ▴ 60

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rtracklayer NA BED getseq

8.4 years ago Dimitris Polychronopoulos ▴ 80

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readvcf plink file conversion bed bioc-devel

9.1 years ago mjsduncan • 0

16 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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