Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
BED
•
reset
4
votes
5
replies
5.4k
views
Convert an R data.frame to a bed file in R
rtracklayer
R
bed
updated 15 months ago by
Walters
• 0 • written 21 months ago by
L
▴ 50
9
votes
9
replies
5.3k
views
Importing a BED file with floating point scores?
rtracklayer
bed
updated 3.2 years ago by
merv
▴ 120 • written 8.0 years ago by
Ryan C. Thompson
★ 7.9k
1
vote
4
replies
2.6k
views
rtracklayer::import()-ing .bed.gz files from a URL
rtracklayer
import
bed
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Peter Hickey
▴ 740
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.1 years ago
mjsduncan
• 0
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
0
votes
1
reply
1.6k
views
Plot per-base-coverage output of a bed file of whole genome
coverage
bed
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
sgupt46
• 0
0
votes
1
reply
1.4k
views
comparing 2 long BED files in R in an efficient way
bed
vcf
updated 5.8 years ago by
GENOMIC_region
• 0 • written 5.8 years ago by
Bogdan
▴ 670
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.3 years ago
rbronste
▴ 60
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.4 years ago
Dimitris Polychronopoulos
▴ 80
5
votes
2
replies
1.2k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
7
replies
1.2k
views
rtracklayer cannot export empty BED file
rtracklayer
bed
genomicranges
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
foehn
▴ 100
1
vote
2
replies
1.2k
views
Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
rtracklayer
bed
software error
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
Ryan C. Thompson
★ 7.9k
3
votes
4
replies
1.1k
views
Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
17 months ago
L
▴ 50
0
votes
3
replies
901
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
sat
• 0
0
votes
1
reply
888
views
Change the interval of bed file
mappability
bed
python
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
0
replies
784
views
Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 170
16 results • Page
1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
I'm new here, but its better now?
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Awards
• All
Popular Question
to
i.sudbery
▴ 30
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Scholar
to
Gordon Smyth
50k
Popular Question
to
taur.vil
• 0
Locations
• All
Sweden,
1 minute ago
Pakistan,
7 minutes ago
India,
10 minutes ago
European Union,
11 minutes ago
Canada,
11 minutes ago
Traffic: 766 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6