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limma with interaction term
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limma design model for categorical variable
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.1 years ago • updated 5.0 years ago Patrick Kimes ▴ 10
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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6.3 years ago Federico Marini ▴ 150
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DESeq2 and betaPrior
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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Calculating a score from fold change matrix of pair-wise rna-seq data
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Job: Data scientist/bioinformatician - Paris
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8.5 years ago David Enot ▴ 30
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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8.8 years ago Simon Anders ★ 3.7k
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error by James W. MacDonald 65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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