Bioconductor BSgenome.Hsapiens.UCSC.hg19

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matchProbePair BSgenome Biostrings BSgenome.Hsapiens.UCSC.hg19

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by svetlana.gorokhova • 0

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BSgenome.Hsapiens.UCSC.hg19

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by Julie Zhu ★ 4.3k

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BSgenome.Hsapiens.UCSC.hg19 HarvardX Introduction to Bioconductor

updated 2.5 years ago by James W. MacDonald 67k • written 4.3 years ago by m.steinruecke ▴ 10

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BSgenome.Hsapiens.UCSC.hg19 AnnotationDbi

13 months ago Erica • 0

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BSgenome.Hsapiens.UCSC.hg19

updated 3.7 years ago by Cheyujlee • 0 • written 4.0 years ago by pegah.taklifi ▴ 30

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ucsc bsgenome.hsapiens.ucsc.hg19

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by Sushant Pawar • 0

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BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub

2.3 years ago • updated 2.2 years ago Lenny186 • 0

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BSgenome.Hsapiens.UCSC.hg19

updated 2.7 years ago by Hervé Pagès 16k • written 2.7 years ago by Bogdan ▴ 670

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.1 years ago by Mike Smith ★ 6.6k • written 7.1 years ago by addyS • 0

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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