Biostar BSgenomeForge

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BSGenomeForge BSGenome

updated 24 months ago by Hervé Pagès 16k • written 24 months ago by sieminsk • 0

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cleanUpdTSeq BSgenome BSgenomeForge

updated 4.1 years ago by Julie Zhu ★ 4.3k • written 4.1 years ago by danielle.bilodeau • 0

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BSgenomeForge

6.5 years ago • updated 6.4 years ago Vijay Lakhujani • 0

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Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …

Comment: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

``` > options(timeout = 1e6) > z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…

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WGCNA: Module preservation vs consensus analysis

Answer: Help with Error in DiffBind

Comment: Help with Error in DiffBind

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