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BSgenomeForge
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Error ambiguity characters in sequences
BSgenomeForge
7 months ago
Bruno
• 0
0
votes
4
replies
899
views
BSgenome for ensembl mm10
BSgenomeForge
BSgenome
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
kyliecode
• 0
2
votes
4
replies
1.7k
views
BSGenome Forge for non-model organism
BSGenomeForge
BSGenome
updated 3.0 years ago by
Hervé Pagès
16k • written 3.0 years ago by
sieminsk
• 0
0
votes
9
replies
1.5k
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Unable to generate feature vector with custom genome in cleanUpdTSeq
cleanUpdTSeq
BSgenome
BSgenomeForge
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
danielle.bilodeau
• 0
0
votes
2
replies
1.1k
views
Error - BSgenomeForge function
BSgenomeForge
7.6 years ago • updated 7.4 years ago
Vijay Lakhujani
• 0
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Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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