Bioconductor BSgenomeForge

Showing : BSgenomeForge • reset

votes

replies

290

views

BSgenomeForge

7 months ago Bruno • 0

votes

replies

895

views

BSgenomeForge BSgenome

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by kyliecode • 0

votes

replies

1.7k

views

BSGenomeForge BSGenome

updated 3.0 years ago by Hervé Pagès 16k • written 3.0 years ago by sieminsk • 0

votes

replies

1.5k

views

cleanUpdTSeq BSgenome BSgenomeForge

updated 5.1 years ago by Julie Zhu ★ 4.3k • written 5.1 years ago by danielle.bilodeau • 0

votes

replies

1.1k

views

BSgenomeForge

7.6 years ago • updated 7.4 years ago Vijay Lakhujani • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All