Biostar Basic4Cseq

Showing : Basic4Cseq • reset

0

votes

5

replies

1.1k

views

Basic4Cseq

updated 6.5 years ago by Carolin Walter ▴ 10 • written 6.5 years ago by sinhashruti • 0

1

vote

6

replies

582

views

Basic4Cseq

updated 12 months ago by koushik • 0 • written 3.3 years ago by ta_awwad ▴ 10

0

votes

2

replies

562

views

Basic4Cseq basic4cseq degenerate sites

6.0 years ago theodore.georgomanolis • 0

0

votes

0

replies

182

views

GenomicInteractions Basic4Cseq DNASeq GenomicFiles

11 months ago koushik • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Error by ATpoint ★ 1.3k

https://github.com/conda-forge/rpy2-feedstock/issues/1

Comment: Error: BiocParallel errors by lxl13260684135 • 0

I came across the same problem, have you solved it?

Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Votes

How to get DESeq2 results for a list of genes

Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

Awards • All

Scholar to jaro.slamecka ▴ 130

Scholar to James W. MacDonald 60k

Teacher to Gordon Smyth 45k