Showing : Beadarray • reset
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beadarray package: problem with object made by createBeadSummaryData
beadarray beadarray
updated 18.1 years ago by ▴ 460 • written 18.1 years ago by ▴ 270
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6
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1.9k
views
Illumina Beadarray negative data
beadarray lumi beadarray lumi
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 640
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3
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1.5k
views
Using beadarray for bead level data, what is the ProbeID with 1000's of beads?
probe beadarray probe beadarray
updated 18.1 years ago by ★ 3.6k • written 18.1 years ago by ▴ 270
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4
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2.7k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 270
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1
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1.7k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 18.1 years ago by ▴ 460 • written 18.1 years ago by ▴ 10
0
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3
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1.5k
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bead level data, readIllumina
beadarray beadarray
updated 18.1 years ago by ▴ 460 • written 18.1 years ago by ▴ 20
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2
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1.0k
views
Beadarray negative background values (bug?)
Cancer beadarray Cancer beadarray
updated 18.2 years ago by ▴ 460 • written 18.2 years ago by ▴ 10
0
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1
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1.5k
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beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 18.2 years ago by ▴ 460 • written 18.2 years ago by ▴ 70
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1
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1.1k
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beadarray bead-level normalisation for single channel data
beadarray beadarray
updated 18.2 years ago by ▴ 550 • written 18.2 years ago by ▴ 70
0
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1
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1.3k
views
RNA degradation for Illumina
affy beadarray lumi affy beadarray lumi
updated 18.3 years ago by ★ 3.6k • written 18.3 years ago by ▴ 110
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6
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2.9k
views
Illumina bead arrays
beadarray beadarray
updated 18.3 years ago by ▴ 40 • written 18.3 years ago by ▴ 110
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0
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1.3k
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.3 years ago Johnstone, Alice ▴ 410
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1
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1.6k
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beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 18.3 years ago by ▴ 320 • written 18.3 years ago by ▴ 270
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1
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1.7k
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ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 18.3 years ago by ▴ 320 • written 18.3 years ago by ▴ 410
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4
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1.8k
views
Beadarray expression data
affy beadarray affy beadarray
updated 18.3 years ago by ▴ 320 • written 18.3 years ago by ▴ 110
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0
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1.0k
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beadarray package: problem with bead level data
GO beadarray GO beadarray
18.4 years ago Krys Kelly ▴ 270
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3
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2.0k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 18.4 years ago by ▴ 40 • written 18.4 years ago by ▴ 270
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4
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1.3k
views
displayTIFFImage funtion in beadarray package
beadarray beadarray
updated 18.4 years ago by ▴ 460 • written 18.4 years ago by ▴ 30
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1
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1.5k
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beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 18.5 years ago by ▴ 460 • written 18.5 years ago by ▴ 10
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2
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1.3k
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beadarray - raw data import - bead background intensities faulty
beadarray beadarray
updated 18.5 years ago by ▴ 320 • written 18.5 years ago by ▴ 20
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0
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885
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Beadarray
beadarray beadarray
18.6 years ago Mark Dunning ▴ 320
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2
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1.2k
views
Help on beadarray
beadarray beadarray
updated 18.6 years ago by ▴ 460 • written 18.6 years ago by ▴ 10
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0
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1.2k
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What is a good method for analyzing differential expression from Illumina BeadStudio summary data?
Normalization GO affy vsn limma beadarray lumi Normalization GO affy vsn limma lumi
18.8 years ago Gordon Smyth 53k
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1
reply
1.1k
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beadarray - readBeadLevelData problems
Cancer beadarray Cancer beadarray
18.8 years ago Mark Dunning ▴ 320
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1
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1.8k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 18.8 years ago by ▴ 320 • written 18.8 years ago by ▴ 70
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0
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769
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beadarray: problem with reading in Bead Summary Data
Biobase affy affyio beadarray Biobase affy affyio beadarray
18.9 years ago Perry Moerland ▴ 130
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2
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1.4k
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beadarray example data problem
Biobase affy affyio beadarray Biobase affy affyio beadarray
19.1 years ago Keith Satterley ▴ 450
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3
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1.4k
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beadarray example data problem 2
Biobase affy affyio beadarray Biobase affy affyio beadarray
19.1 years ago Martin Morgan 25k
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8
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2.3k
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illumina --> limma?
GO limma beadarray BeadExplorer GO limma beadarray BeadExplorer
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
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0
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1.3k
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LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.5 years ago Mark Dunning ▴ 320
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5
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2.1k
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info su illumina
beadarray beadarray
updated 19.8 years ago by ▴ 320 • written 19.8 years ago by ▴ 250
181 results • Page 4 of 4
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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