Bioconductor BiSeq

Showing : BiSeq • reset

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4.6k

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biseq fdr data results

10.8 years ago • updated 10.7 years ago mnaymik ▴ 10

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2.2k

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BiSeq DMR

updated 5.6 years ago by James W. MacDonald 68k • written 5.6 years ago by akhaira • 0

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1.8k

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biseq beta regression

5.6 years ago akhaira • 0

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2.5k

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biseq error trimClusters

updated 10.0 years ago by Katja Hebestreit ▴ 130 • written 10.1 years ago by kms68 • 0

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2.8k

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biseq RRBS SAAP-BS coverage

10.8 years ago maria.maqueda • 0

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2.5k

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BiSeq readBismark

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Neel Aluru ▴ 460

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2.2k

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BiSeq BiSeq

updated 12.0 years ago by David Iles ▴ 130 • written 12.0 years ago by Hans-Ulrich Klein ▴ 330

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1.9k

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biseq methylation dmr analysis

updated 9.1 years ago by Katja Hebestreit ▴ 130 • written 9.1 years ago by jjalmagro • 0

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3.2k

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dmr methylation deseq2 bsseq biseq

updated 10.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 10.3 years ago by enricoferrero ▴ 680

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1.1k

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BiSeq

4.0 years ago thomas.koefoed • 0

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1.6k

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biseq RRBS betaregression

8.8 years ago l.eijssen • 0

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1.5k

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dna methylation biseq

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by ahmad.moousavi • 0

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1.4k

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biseq package installation r

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by lwh863 • 0

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1.0k

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biseq betaRegression RRBS Methylation

5.9 years ago i.s.castanho • 0

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1.1k

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biseq R methylation

5.7 years ago AishaD • 0

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1.2k

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BiSeq testClusters error dmr

5.6 years ago akhaira • 0

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1.5k

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bedgraph .cov wig biseq coverage

5.6 years ago akhaira • 0

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785

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Biseq

5.6 years ago akhaira • 0

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1.3k

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biseq ccle

7.5 years ago spr ▴ 10

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1.2k

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Biseq Methylation DMP DMR RRBS

5.5 years ago i.s.castanho • 0

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2.1k

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methylation linear model dmr bsseq biseq

10.2 years ago enricoferrero ▴ 680

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976

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BiSeq Coldata

5.7 years ago akhaira • 0

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1.1k

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BiSeq Wald test Beta regression

7.0 years ago mira • 0

23 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k