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BigWig
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1.4k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
17 months ago • updated 14 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 19 months ago by
complaintguide
• 0 • written 19 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.2k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.2 years ago • updated 2.1 years ago
bas_work
▴ 30
0
votes
5
replies
1.6k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.0 years ago
lsilva.m
• 0
0
votes
1
reply
1.5k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.5 years ago by
kaur.alasoo
▴ 30 • written 6.5 years ago by
borgmichael
• 0
3
votes
15
replies
2.9k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.1k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
zx8754
▴ 10
2
votes
3
replies
1.3k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.2k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.1 years ago by
laurent.lacroix
▴ 30 • written 8.2 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
dborgesrmit
• 0
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
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Yes that is correct
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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