Bioconductor BigWig

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2.0k

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DESeq2 edgeR bigwig limma

2.3 years ago • updated 2.0 years ago Bogdan ▴ 670

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2.3k

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bedgraph wiggleplotr bigwig wig

updated 2.4 years ago by complaintguide • 0 • written 2.4 years ago by Bogdan ▴ 670

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1.8k

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bigWig RNASeqData

3.0 years ago bas_work ▴ 30

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2.2k

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software error BigWig import windows

4.8 years ago lsilva.m • 0

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2.2k

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wiggleplotr bigwig coverage ngs

updated 7.3 years ago by kaur.alasoo ▴ 30 • written 7.3 years ago by borgmichael • 0

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3.5k

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bigwig rtracklayer import granges grangeslist

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by story.benjamin ▴ 20

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2.6k

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rtracklayer bigwig

updated 9.0 years ago by laurent.lacroix ▴ 30 • written 9.0 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by dborgesrmit • 0

10 results • Page 1 of 1

Recent ...

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750