Bioconductor BigWig

Showing : BigWig • reset

votes

replies

3.1k

views

rtracklayer bigwig

updated 9.9 years ago by laurent.lacroix ▴ 30 • written 9.9 years ago by koneill ▴ 30

votes

replies

1.9k

views

bigwig rtracklayer export.bw

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by story.benjamin ▴ 20

votes

1.6k

views

rtracklayer bigwig import

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by zx8754 ▴ 10

votes

replies

4.2k

views

bigwig rtracklayer import granges grangeslist

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Assa Yeroslaviz ★ 1.5k

votes

2.7k

views

wiggleplotr bigwig coverage ngs

updated 8.2 years ago by kaur.alasoo ▴ 30 • written 8.2 years ago by borgmichael • 0

votes

replies

2.7k

views

software error BigWig import windows

5.7 years ago lsilva.m • 0

votes

2.5k

views

DESeq2 edgeR bigwig limma

3.2 years ago • updated 2.9 years ago Bogdan ▴ 670

votes

replies

2.8k

views

bedgraph wiggleplotr bigwig wig

updated 3.3 years ago by complaintguide • 0 • written 3.3 years ago by Bogdan ▴ 670

votes

replies

1.6k

views

rtracklayer BigWig

updated 10.1 years ago by Michael Lawrence ★ 11k • written 10.1 years ago by dborgesrmit • 0

votes

2.1k

views

bigWig RNASeqData

3.9 years ago bas_work ▴ 30

10 results • Page 1 of 1

Recent ...

Replies

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All