Bioconductor BigWig

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2.0k

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DESeq2 edgeR bigwig limma

2.3 years ago • updated 2.0 years ago Bogdan ▴ 670

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replies

2.2k

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bedgraph wiggleplotr bigwig wig

updated 2.4 years ago by complaintguide • 0 • written 2.4 years ago by Bogdan ▴ 670

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1.8k

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bigWig RNASeqData

3.0 years ago • updated 2.9 years ago bas_work ▴ 30

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2.1k

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software error BigWig import windows

4.8 years ago lsilva.m • 0

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2.2k

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wiggleplotr bigwig coverage ngs

updated 7.3 years ago by kaur.alasoo ▴ 30 • written 7.3 years ago by borgmichael • 0

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3.5k

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bigwig rtracklayer import granges grangeslist

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by story.benjamin ▴ 20

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2.6k

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rtracklayer bigwig

updated 9.0 years ago by laurent.lacroix ▴ 30 • written 9.0 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by dborgesrmit • 0

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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