updated 5 months ago by
neckerchieffickle
•
0
•
written 6 months ago by
Peter Hickey
▴
650
1
vote
1
reply
217
views
1
vote
2
replies
712
views
8 months ago • updated 6 months ago
Peter Hickey
▴
650
0
votes
0
replies
519
views
20 months ago
Peter Hickey
▴
650
Recent ...
Replies
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
by
ATpoint
★
2.8k
No, both tools expect count data with certain distributional assumptions which are not satisfied by binary data.
Since you're a master …
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
Sorry, but some of the things you say are not correct.
> compound B has 2 statistically significant genes that are up-regulated
No, there…
Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`
Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…
Awards
• All
Popular Question to
ioannis.vardaxis
▴
30
Scholar to
Erqiang Hu
▴
50
Popular Question to
Matthew Thornton
▴
350
Scholar to
Hervé Pagès
16k
Popular Question to
Habil Zare
▴
170
Locations
• All
France/Marseille/Inserm, 1 hour ago
Germany, 1 hour ago
Israel, 3 hours ago
Melbourne, Australia, 3 hours ago
The city by the bay, 4 hours ago
France/Marseille/Inserm, 1 hour ago
Germany, 1 hour ago
Israel, 3 hours ago
Melbourne, Australia, 3 hours ago
The city by the bay, 4 hours ago
Traffic: 226 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6