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BioConductor
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0
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53
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Normalising processed Proteomics data in R
Bioconductor
Proteomics
8 days ago
Joshua
• 0
0
votes
6
replies
1.6k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 13 days ago by
ATpoint
★ 3.6k • written 12 months ago by
laujihen
• 0
2
votes
0
replies
280
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
14 days ago
Maria Doyle
▴ 50
0
votes
0
replies
86
views
News:
CRAN downtime
BiocManager
Bioconductor
18 days ago
shepherl
3.6k
2
votes
4
replies
247
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 23 days ago by
shepherl
3.6k • written 24 days ago by
lavanilla44
• 0
0
votes
1
reply
467
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
3 months ago • updated 27 days ago
Gordon Smyth
48k
0
votes
3
replies
199
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
27 days ago • updated 24 days ago
blessybo
• 0
0
votes
1
reply
161
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 4 weeks ago by
shepherl
3.6k • written 4 weeks ago by
Marek Gierlinski
▴ 10
4
votes
10
replies
1.3k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 5 weeks ago by
shepherl
3.6k • written 14 months ago by
Florian Finkernagel
▴ 30
3
votes
0
replies
173
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
5 weeks ago
shepherl
3.6k
0
votes
0
replies
157
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
6 weeks ago
info
▴ 10
2
votes
10
replies
1.8k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
Bioconductor
devel
Devel
5 months ago • updated 6 weeks ago
shepherl
3.6k
2
votes
1
reply
595
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 7 weeks ago by
Gordon Smyth
48k • written 7 weeks ago by
ningyuan
• 0
1
vote
5
replies
314
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 7 days ago by
James W. MacDonald
64k • written 8 weeks ago by
cinzia.spagnoli
• 0
5
votes
2
replies
282
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
9 weeks ago
Federico
▴ 10
0
votes
2
replies
288
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 9 weeks ago by
James W. MacDonald
64k • written 9 weeks ago by
nilanjanamani88
• 0
0
votes
2
replies
571
views
Bioconductor version cannot be validated
Bioconductor
updated 26 days ago by
Manuel
• 0 • written 10 weeks ago by
xlu.cpu
• 0
0
votes
1
reply
1.3k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 10 weeks ago by
James W. MacDonald
64k • written 10 weeks ago by
Aytaç
• 0
0
votes
2
replies
454
views
MACS2 not installing
Bioconductor
12 weeks ago
alia.sinqua
• 0
0
votes
0
replies
436
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
3 months ago
NewtoBioconductor
• 0
1
vote
4
replies
446
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
3 months ago
patrick.turko
• 0
0
votes
1
reply
194
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 3 months ago by
ATpoint
★ 3.6k • written 3 months ago by
laura1_z
• 0
1
vote
2
replies
346
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 3 months ago by
James W. MacDonald
64k • written 3 months ago by
Ashton
▴ 10
1
vote
13
replies
7.8k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 3 months ago by
Mehdi
• 0 • written 11 months ago by
k.wickstrom
• 0
0
votes
0
replies
250
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
4 months ago • updated 3 months ago
Maria Doyle
▴ 50
0
votes
18
replies
1.9k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
updated 3 months ago by
Jenifer
• 0 • written 2.7 years ago by
lea
• 0
0
votes
2
replies
1.0k
views
vmatchPattern on DNAstring set
Bioconductor
4 months ago
Avner
• 0
0
votes
1
reply
247
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
4 months ago
Arianna
• 0
0
votes
1
reply
338
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 4 months ago by
Mike Smith
★ 6.2k • written 4 months ago by
Catia
• 0
3
votes
5
replies
634
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 4 months ago by
Vincent J. Carey, Jr.
6.7k • written 4 months ago by
Ndimensional
▴ 20
0
votes
0
replies
265
views
News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
4 months ago
Maria Doyle
▴ 50
0
votes
0
replies
268
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
4 months ago
info
▴ 10
0
votes
5
replies
575
views
What to whitelist in Firewall to allow downloading packages
Bioconductor
NetworkInference
updated 4 months ago by
shepherl
3.6k • written 4 months ago by
Albert
• 0
1
vote
0
replies
234
views
News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
5 months ago
shepherl
3.6k
0
votes
1
reply
296
views
BiocManager Package installs
Bioconductor
updated 6 months ago by
shepherl
3.6k • written 6 months ago by
joseph.cerra
• 0
0
votes
2
replies
586
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
7 months ago • updated 6 months ago
shepherl
3.6k
0
votes
0
replies
221
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
6 months ago
shepherl
3.6k
0
votes
6
replies
590
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
6 months ago • updated 5 months ago
simone.tiberi
• 0
0
votes
0
replies
269
views
News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
Community
BioC2023
6 months ago
Maria Doyle
▴ 50
0
votes
4
replies
516
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
6 months ago
sreeshmaraj72
• 0
1
vote
0
replies
430
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
6 months ago
shepherl
3.6k
0
votes
0
replies
310
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
6 months ago
shepherl
3.6k
0
votes
0
replies
352
views
News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
7 months ago • updated 6 months ago
shepherl
3.6k
0
votes
0
replies
332
views
News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
Recognition
7 months ago • updated 6 months ago
shepherl
3.6k
0
votes
0
replies
331
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
7 months ago • updated 6 months ago
shepherl
3.6k
0
votes
0
replies
875
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
6 months ago
Maria Doyle
▴ 50
0
votes
1
reply
526
views
Potential segfault bug in featureCounts using long read data
Bioconductor
Rsubread
featureCounts
updated 6 months ago by
Wei Shi
★ 3.5k • written 7 months ago by
Carlos
• 0
0
votes
0
replies
390
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
7 months ago
Maria Doyle
▴ 50
0
votes
0
replies
465
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
7 months ago
Javier
• 0
0
votes
0
replies
296
views
News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training
Bioconductor
Event
Community
Tutorial
7 months ago
Maria Doyle
▴ 50
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Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Daniel E. Weeks
▴ 20
Thank you for the explanation and contacting the DSS package authors.
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
shepherl
3.6k
The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…
Answer: GOslim missing GO term
by
James W. MacDonald
64k
I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…
Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient
by
James W. MacDonald
64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
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★ 1.5k
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48k
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